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(v1.5.0.9012) ampc_cephalosporin_resistance for I

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dr. M.S. (Matthijs) Berends
2021-01-25 21:58:00 +01:00
parent 24eb4453db
commit 331c1f6508
19 changed files with 73 additions and 35 deletions
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docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9012</span>
</span>
</div>
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<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1509011" class="section level1">
<h1 class="page-header" data-toc-text="1.5.0.9011">
<a href="#amr-1509011" class="anchor"></a>AMR 1.5.0.9011<small> Unreleased </small>
<div id="amr-1509012" class="section level1">
<h1 class="page-header" data-toc-text="1.5.0.9012">
<a href="#amr-1509012" class="anchor"></a>AMR 1.5.0.9012<small> Unreleased </small>
</h1>
<div id="last-updated-24-january-2021" class="section level2">
<div id="last-updated-25-january-2021" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-24-january-2021" class="anchor"></a><small>Last updated: 24 January 2021</small>
<a href="#last-updated-25-january-2021" class="anchor"></a><small>Last updated: 25 January 2021</small>
</h2>
<div id="new" class="section level3">
<h3 class="hasAnchor">
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<li>
<code><a href="../reference/as.rsi.html">is.rsi.eligible()</a></code> now returns <code>FALSE</code> immediately if the input does not contain any of the values “R”, “S” or “I”. This drastically improves speed, also for a lot of other functions that rely on automatic determination of antibiotic columns.</li>
<li>Functions <code><a href="../reference/get_episode.html">get_episode()</a></code> and <code><a href="../reference/get_episode.html">is_new_episode()</a></code> now support less than a day as value for argument <code>episode_days</code> (e.g., to include one patient/test per hour)</li>
<li>Argument <code>ampc_cephalosporin_resistance</code> in <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code> now also applies to value “I” (not only “S”)</li>
</ul>
</div>
<div id="other" class="section level3">