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@ -14,8 +14,8 @@
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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -401,19 +401,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 I I S I I I</span></span>
<span><span class="co">#&gt; 2 I I I I I I</span></span>
<span><span class="co">#&gt; 3 I S R R S S</span></span>
<span><span class="co">#&gt; 4 I I R I R I</span></span>
<span><span class="co">#&gt; 5 I S I I R I</span></span>
<span><span class="co">#&gt; 6 S I R R R I</span></span>
<span><span class="co">#&gt; 1 S I R I S I</span></span>
<span><span class="co">#&gt; 2 S R I I R I</span></span>
<span><span class="co">#&gt; 3 S I R R S I</span></span>
<span><span class="co">#&gt; 4 S S I R S I</span></span>
<span><span class="co">#&gt; 5 S R S I S S</span></span>
<span><span class="co">#&gt; 6 S I R I R R</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 R</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 S</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 S</span></span></code></pre></div>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -454,32 +454,32 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3223</td>
<td align="right">64.46%</td>
<td align="right">3223</td>
<td align="right">64.46%</td>
<td align="right">3233</td>
<td align="right">64.66%</td>
<td align="right">3233</td>
<td align="right">64.66%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1033</td>
<td align="right">20.66%</td>
<td align="right">4256</td>
<td align="right">85.12%</td>
<td align="right">945</td>
<td align="right">18.90%</td>
<td align="right">4178</td>
<td align="right">83.56%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">402</td>
<td align="right">8.04%</td>
<td align="right">4658</td>
<td align="right">93.16%</td>
<td align="right">446</td>
<td align="right">8.92%</td>
<td align="right">4624</td>
<td align="right">92.48%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">241</td>
<td align="right">4.82%</td>
<td align="right">275</td>
<td align="right">5.50%</td>
<td align="right">4899</td>
<td align="right">97.98%</td>
</tr>