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(v1.2.0.9014) ab_from_text()

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dr. M.S. (Matthijs) Berends
2020-06-25 17:34:50 +02:00
parent 8a66e475d7
commit 344bbd57f4
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NEWS.md
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# AMR 1.2.0.9013
## <small>Last updated: 22-Jun-2020</small>
# AMR 1.2.0.9014
## <small>Last updated: 25-Jun-2020</small>
### New
* Function `ab_from_text()` to retrieve antimicrobial drugs from clinical texts in e.g. health care records, which also corrects for misspelling since it uses `as.ab()` internally:
```r
ab_from_text("28/03/2020 regular amoxiciliin 500mg po tds")
#> [1] "Amoxicillin"
```
* [Tidyverse selections](https://tidyselect.r-lib.org/reference/language.html) for antibiotic classes, that help to select the columns of antibiotics that are of a specific antibiotic class, without the need to define the columns or antibiotic abbreviations. They can be used in any function that allows Tidyverse selections, like `dplyr::select()` and `tidyr::pivot_longer()`:
```r
library(dplyr)
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* Added antibiotics code "FOX1" for cefoxitin screening (abbreviation "cfsc") to the `antibiotics` data set
### Changed
* Fixed a bug for using `susceptibility` or `resistance()` outside `summarise()`
* Fixed a bug where `eucast_rules()` would not work on a tibble when the `tibble` or `dplyr` package was loaded
* All `*_join_microorganisms()` functions and `bug_drug_combinations()` now return the original data class (e.g. `tibble`s and `data.table`s)
* Fixed a bug where `as.ab()` would return an error on invalid input values
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* Fixed a bug in `bug_drug_combinations()` for when only one antibiotic was in the input data
* Changed the summary for class `<mo>`, to highlight the %SI vs. %R
* Improved error handling, giving more useful info when functions return an error
* Algorithm improvements to `as.ab()`
* Added Monuril as trade name for fosfomycin
# AMR 1.2.0