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added septic_patients

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dr. M.S. (Matthijs) Berends
2018-02-27 20:01:02 +01:00
parent 98b2b99913
commit 34e70a65ed
10 changed files with 202 additions and 94 deletions
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12
man/join.Rd
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@ -13,22 +13,22 @@
\usage{
inner_join_bactlist(x, by = "bactid", ...)
left_join_bactlist(x, by = "bacteriecode", ...)
left_join_bactlist(x, by = "bactid", ...)
right_join_bactlist(x, by = "bacteriecode", ...)
right_join_bactlist(x, by = "bactid", ...)
full_join_bactlist(x, by = "bacteriecode", ...)
full_join_bactlist(x, by = "bactid", ...)
semi_join_bactlist(x, by = "bacteriecode", ...)
semi_join_bactlist(x, by = "bactid", ...)
anti_join_bactlist(x, by = "bacteriecode", ...)
anti_join_bactlist(x, by = "bactid", ...)
}
\arguments{
\item{x}{existing table to join}
\item{by}{a variable to join by - could be a column name of \code{x} with values that exist in \code{bactlist$bactid} (like \code{by = "bacteria_id"}), or another column in \code{\link{bactlist}} (but then it should be named, like \code{by = c("my_genus_species" = "fullname")})}
\item{...}{other parameters to pass trhough to \code{dplyr::\link[dplyr]{join}}.}
\item{...}{other parameters to pass on to \code{dplyr::\link[dplyr]{join}}.}
}
\description{
Join the list of microorganisms \code{\link{bactlist}} easily to an existing table.