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Built site for AMR@2.1.1.9112: e231352
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extra.js
54
extra.js
@ -67,32 +67,34 @@ $(document).ready(function() {
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// add country flags
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function country_flag(x) {
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if (typeof(x) != "undefined") {
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x = x.replace("Alex", '<img src="lang_de.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Alex');
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x = x.replace("Andrew", '<img src="lang_us.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Andrew');
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x = x.replace("Anita", '<img src="lang_au.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Anita');
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x = x.replace("Annick", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Annick');
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x = x.replace("Anthony", '<img src="lang_en.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Anthony');
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x = x.replace("Anton", '<img src="lang_uk.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Anton');
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x = x.replace("Bart", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Bart');
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x = x.replace("Bhanu", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Bhanu');
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x = x.replace("Casper", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Casper');
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x = x.replace("Christian", '<img src="lang_de.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Christian');
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x = x.replace("Corinna", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Corinna');
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x = x.replace("Dennis", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Dennis');
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x = x.replace("Dmytro", '<img src="lang_uk.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Dmytro');
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x = x.replace("Eric", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Eric');
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x = x.replace("Erwin", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Erwin');
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x = x.replace("Gwen", '<img src="lang_en.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Gwen');
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x = x.replace("Jason", '<img src="lang_ca.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Jason');
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x = x.replace("Javier", '<img src="lang_ca.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Javier');
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x = x.replace("Jonas", '<img src="lang_de.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Jonas');
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x = x.replace("Judith", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Judith');
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x = x.replace("Larisse", '<img src="lang_sa.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Larisse');
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x = x.replace("Matthew", '<img src="lang_ca.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Matthew');
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x = x.replace("Matthijs", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Matthijs');
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x = x.replace("Peter", '<img src="lang_en.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Peter');
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x = x.replace("Rogier", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Rogier');
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x = x.replace("Sofia", '<img src="lang_sv.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Sofia');
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const prefix = '<img src="lang_';
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const suffix = '.svg" style="height: 13px !important; border: 1px solid #cccccc; aspect-ratio: 1 / 0.6; object-fit: cover; vertical-align: initial !important;"> ';
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x = x.replace("Alex", prefix + "de" + suffix + "Alex");
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x = x.replace("Andrew", prefix + "us" + suffix + "Andrew");
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x = x.replace("Anita", prefix + "au" + suffix + "Anita");
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x = x.replace("Annick", prefix + "nl" + suffix + "Annick");
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x = x.replace("Anthony", prefix + "en" + suffix + "Anthony");
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x = x.replace("Anton", prefix + "uk" + suffix + "Anton");
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x = x.replace("Bart", prefix + "nl" + suffix + "Bart");
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x = x.replace("Bhanu", prefix + "nl" + suffix + "Bhanu");
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x = x.replace("Casper", prefix + "nl" + suffix + "Casper");
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x = x.replace("Christian", prefix + "de" + suffix + "Christian");
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x = x.replace("Corinna", prefix + "nl" + suffix + "Corinna");
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x = x.replace("Dennis", prefix + "nl" + suffix + "Dennis");
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x = x.replace("Dmytro", prefix + "uk" + suffix + "Dmytro");
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x = x.replace("Eric", prefix + "nl" + suffix + "Eric");
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x = x.replace("Erwin", prefix + "nl" + suffix + "Erwin");
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x = x.replace("Gwen", prefix + "en" + suffix + "Gwen");
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x = x.replace("Jason", prefix + "ca" + suffix + "Jason");
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x = x.replace("Javier", prefix + "ca" + suffix + "Javier");
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x = x.replace("Jonas", prefix + "de" + suffix + "Jonas");
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x = x.replace("Judith", prefix + "nl" + suffix + "Judith");
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x = x.replace("Larisse", prefix + "sa" + suffix + "Larisse");
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x = x.replace("Matthew", prefix + "ca" + suffix + "Matthew");
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x = x.replace("Matthijs", prefix + "nl" + suffix + "Matthijs");
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x = x.replace("Peter", prefix + "en" + suffix + "Peter");
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x = x.replace("Rogier", prefix + "nl" + suffix + "Rogier");
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x = x.replace("Sofia", prefix + "sv" + suffix + "Sofia");
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}
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return(x);
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}
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@ -11,7 +11,7 @@ articles:
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resistance_predict: resistance_predict.html
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welcome_to_AMR: welcome_to_AMR.html
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WHONET: WHONET.html
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last_built: 2024-12-09T13:46Z
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last_built: 2024-12-09T17:45Z
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urls:
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reference: https://msberends.github.io/AMR/reference
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article: https://msberends.github.io/AMR/articles
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@ -785,16 +785,16 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 57 × 16</span></span>
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<span class="r-out co"><span class="r-pr">#></span> datetime index ab_given mo_given host_given ab mo </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">*</span> <span style="color: #949494; font-style: italic;"><dttm></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><ab></span> <span style="color: #949494; font-style: italic;"><mo></span> </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2024-12-09 <span style="color: #949494;">13:47:36</span> 4 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2024-12-09 <span style="color: #949494;">13:47:43</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2024-12-09 <span style="color: #949494;">13:47:43</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2024-12-09 <span style="color: #949494;">13:47:44</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2024-12-09 <span style="color: #949494;">13:47:44</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2024-12-09 <span style="color: #949494;">13:47:36</span> 3 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2024-12-09 <span style="color: #949494;">13:47:43</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2024-12-09 <span style="color: #949494;">13:47:43</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2024-12-09 <span style="color: #949494;">13:47:44</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2024-12-09 <span style="color: #949494;">13:47:44</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2024-12-09 <span style="color: #949494;">17:46:26</span> 4 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2024-12-09 <span style="color: #949494;">17:46:32</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2024-12-09 <span style="color: #949494;">17:46:33</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2024-12-09 <span style="color: #949494;">17:46:33</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2024-12-09 <span style="color: #949494;">17:46:34</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2024-12-09 <span style="color: #949494;">17:46:26</span> 3 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2024-12-09 <span style="color: #949494;">17:46:32</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2024-12-09 <span style="color: #949494;">17:46:33</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2024-12-09 <span style="color: #949494;">17:46:33</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2024-12-09 <span style="color: #949494;">17:46:34</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 47 more rows</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 9 more variables: host <chr>, method <chr>, input <dbl>, outcome <sir>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>,</span></span>
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