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@@ -30,7 +30,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9035</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9036</small>
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@@ -255,10 +255,11 @@ Longest: 40</p>
<code class="sourceCode R"><span><span class="co"># our transformed antibiotic columns</span></span>
<span><span class="co"># amoxicillin/clavulanic acid (J01CR02) as an example</span></span>
<span><span class="va">data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://msberends.github.io/cleaner/reference/freq.html" class="external-link">freq</a></span><span class="op">(</span><span class="va">AMC_ND2</span><span class="op">)</span></span>
<span><span class="co">#&gt; <span style="color: #0000BB;">ℹ `susceptibility()` assumes the EUCAST guideline and thus considers the</span></span></span>
<span><span class="co"><span style="color: #0000BB;">#&gt; 'I' category susceptible. Set the `guideline` argument or the</span></span></span>
<span><span class="co"><span style="color: #0000BB;">#&gt; `AMR_guideline` option to either "CLSI" or "EUCAST", see `?AMR-options`.</span></span></span>
<span><span class="co">#&gt; <span style="color: #0000BB;">ℹ This message will be shown once per session.</span></span></span></code></pre></div>
<span><span class="co">#&gt; <span style="color: #00BBBB;">ℹ</span> `susceptibility()` (`?AMR::susceptibility()`) assumes the EUCAST guideline</span></span>
<span><span class="co">#&gt; and thus considers the 'I' category susceptible. Set the `guideline` argument</span></span>
<span><span class="co">#&gt; or the `AMR_guideline` option to either "CLSI" or "EUCAST", see AMR-options</span></span>
<span><span class="co">#&gt; (`?AMR::AMR-options`).</span></span>
<span><span class="co">#&gt; <span style="color: #00BBBB;">ℹ</span> This message will be shown once per session.</span></span></code></pre></div>
<p><strong>Frequency table</strong></p>
<p>Class: factor &gt; ordered &gt; sir (numeric)<br>
Length: 500<br>