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2026-03-20 16:11:30 +00:00
parent ba003f3e23
commit 3560dfd611
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16
reference/custom_mdro_guideline.md
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@@ -473,9 +473,9 @@ x <- custom_mdro_guideline(
)
x
#> A set of custom MDRO rules:
#> 1. If CIP is R and age is higher than 60 then: Elderly Type A
#> 2. If ERY is R and age is higher than 60 then: Elderly Type B
#> 3. Otherwise: Negative
#>   1. If CIP is R and age is higher than 60 then: Elderly Type A
#>   2. If ERY is R and age is higher than 60 then: Elderly Type B
#>   3. Otherwise: Negative
#>
#> Unmatched rows will return NA.
#> Results will be of class 'factor', with ordered levels: Negative < Elderly Type A < Elderly Type B
@@ -518,9 +518,9 @@ my_guideline <- custom_mdro_guideline(
)
my_guideline
#> A set of custom MDRO rules:
#> 1. If AMX is R then: Custom MDRO 1
#> 2. If all of cephalosporins_2nd() is R then: Custom MDRO 2
#> 3. Otherwise: Negative
#>   1. If AMX is R then: Custom MDRO 1
#>   2. If all of cephalosporins_2nd() is R then: Custom MDRO 2
#>   3. Otherwise: Negative
#>
#> Unmatched rows will return NA.
#> Results will be of class 'factor', with ordered levels: Negative < Custom MDRO 1 < Custom MDRO 2
@@ -528,8 +528,8 @@ my_guideline
out <- mdro(example_isolates, guideline = my_guideline)
#> ℹ For `cephalosporins_2nd()` using columns 'CXM' (cefuroxime) and 'FOX'
#> (cefoxitin)
#> ℹ Assuming a filter on all 2 cephalosporins_2nd. Wrap around `all()` or
#> `any()` to prevent this note.
#> ℹ Assuming a filter on all 2 cephalosporins_2nd. Wrap around `all()` or `any()`
#> to prevent this note.
table(out)
#> out
#> Negative Custom MDRO 1 Custom MDRO 2