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reference/mo_matching_score.md
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@@ -190,21 +190,21 @@ as.mo("E. coli")
#> [1] B_ESCHR_COLI
mo_uncertainties()
#> Matching scores are based on the resemblance between the input and the full
#> taxonomic name, and the pathogenicity in humans. See `?mo_matching_score`.
#> taxonomic name, and the pathogenicity in humans. See `mo_matching_score()`
#> (`?AMR::mo_matching_score()`).
#> Colour keys: 0.000-0.549 0.550-0.649 0.650-0.749 0.750-1.000
#>
#> --------------------------------------------------------------------------------
#> -------------------------------------------------------------------------------
#> "E. coli" -> Escherichia coli (B_ESCHR_COLI, 0.688)
#> Also matched: Enterococcus crotali (0.650), Escherichia coli coli
#> (0.643), Escherichia coli expressing (0.611), Enterobacter cowanii
#> (0.600), Enterococcus columbae (0.595), Enterococcus camelliae (0.591),
#> Enterococcus casseliflavus (0.577), Enterobacter cloacae cloacae
#> (0.571), Enterobacter cloacae complex (0.571), and Enterobacter cloacae
#> dissolvens (0.565)
#> Also matched: Enterococcus crotali (0.650), Escherichia coli coli (0.643),
#> Escherichia coli expressing (0.611), Enterobacter cowanii (0.600), Enterococcus
#> columbae (0.595), Enterococcus camelliae (0.591), Enterococcus casseliflavus
#> (0.577), Enterobacter cloacae cloacae (0.571), Enterobacter cloacae complex
#> (0.571), and Enterobacter cloacae dissolvens (0.565)
#>
#> Only the first 10 other matches of each record are shown. Run
#> `print(mo_uncertainties(), n = ...)` to view more entries, or save
#> `mo_uncertainties()` to an object.
#> ℹ Only the first 10 other matches of each record are shown. Run
#> `print(mo_uncertainties(), n = ...)` (`?AMR::mo_uncertainties()`) to view
#> more entries, or save `mo_uncertainties()` (`?AMR::mo_uncertainties()`) to an
#> object.
mo_matching_score(
x = "E. coli",