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(v0.7.1.9076) mo codes

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dr. M.S. (Matthijs) Berends
2019-09-20 12:33:05 +02:00
parent e2aa4f996b
commit 3596adb295
41 changed files with 465 additions and 520 deletions
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man/microorganisms.Rd
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@ -4,7 +4,7 @@
\name{microorganisms}
\alias{microorganisms}
\title{Data set with ~70,000 microorganisms}
\format{A \code{\link{data.frame}} with 69,460 observations and 16 variables:
\format{A \code{\link{data.frame}} with 69,454 observations and 16 variables:
\describe{
\item{\code{mo}}{ID of microorganism as used by this package}
\item{\code{col_id}}{Catalogue of Life ID}
@ -34,7 +34,7 @@ Manually added were:
\item{2 entries of \emph{Staphylococcus} (coagulase-negative [CoNS] and coagulase-positive [CoPS])}
\item{3 entries of \emph{Trichomonas} (\emph{Trichomonas vaginalis}, and its family and genus)}
\item{5 other 'undefined' entries (unknown, unknown Gram negatives, unknown Gram positives, unknown yeast and unknown fungus)}
\item{22,654 species from the DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) overwriting records from the Catalogue of Life, since the DSMZ contain the latest taxonomic information based on recent publications}
\item{9,460 species from the DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) since the DSMZ contain the latest taxonomic information based on recent publications}
}
}
\section{About the records from DSMZ (see source)}{