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reference/resistance_predict.html
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9232</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9233</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<dt id="arg-col-ab">col_ab<a class="anchor" aria-label="anchor" href="#arg-col-ab"></a></dt>
<dd><p>Column name of <code>x</code> containing antimicrobial interpretations (<code>"R"</code>, <code>"I"</code> and <code>"S"</code>)</p></dd>
<dd><p>Column name of <code>x</code> containing antimicrobial interpretations (<code>"R"</code>, <code>"I"</code> and <code>"S"</code>).</p></dd>
<dt id="arg-col-date">col_date<a class="anchor" aria-label="anchor" href="#arg-col-date"></a></dt>
<dd><p>Column name of the date, will be used to calculate years if this column doesn't consist of years already - the default is the first column of with a date class</p></dd>
<dd><p>Column name of the date, will be used to calculate years if this column doesn't consist of years already - the default is the first column of with a date class.</p></dd>
<dt id="arg-year-min">year_min<a class="anchor" aria-label="anchor" href="#arg-year-min"></a></dt>
<dd><p>Lowest year to use in the prediction model, dafaults to the lowest year in <code>col_date</code></p></dd>
<dd><p>Lowest year to use in the prediction model, dafaults to the lowest year in <code>col_date</code>.</p></dd>
<dt id="arg-year-max">year_max<a class="anchor" aria-label="anchor" href="#arg-year-max"></a></dt>
<dd><p>Highest year to use in the prediction model - the default is 10 years after today</p></dd>
<dd><p>Highest year to use in the prediction model - the default is 10 years after today.</p></dd>
<dt id="arg-year-every">year_every<a class="anchor" aria-label="anchor" href="#arg-year-every"></a></dt>
<dd><p>Unit of sequence between lowest year found in the data and <code>year_max</code></p></dd>
<dd><p>Unit of sequence between lowest year found in the data and <code>year_max</code>.</p></dd>
<dt id="arg-minimum">minimum<a class="anchor" aria-label="anchor" href="#arg-minimum"></a></dt>
@ -124,19 +124,19 @@
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>Arguments passed on to functions</p></dd>
<dd><p>Arguments passed on to functions.</p></dd>
<dt id="arg-main">main<a class="anchor" aria-label="anchor" href="#arg-main"></a></dt>
<dd><p>Title of the plot</p></dd>
<dd><p>Title of the plot.</p></dd>
<dt id="arg-ribbon">ribbon<a class="anchor" aria-label="anchor" href="#arg-ribbon"></a></dt>
<dd><p>A <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether a ribbon should be shown (default) or error bars</p></dd>
<dd><p>A <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether a ribbon should be shown (default) or error bars.</p></dd>
<dt id="arg-object">object<a class="anchor" aria-label="anchor" href="#arg-object"></a></dt>
<dd><p>Model data to be plotted</p></dd>
<dd><p>Model data to be plotted.</p></dd>
</dl></div>
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