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(v2.1.1.9235) New website!

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dr. M.S. (Matthijs) Berends
2025-04-08 15:54:30 +01:00
parent a905303296
commit 36fd99e1f4
172 changed files with 2003 additions and 5522 deletions
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2
data-raw/_reproduction scripts/reproduction_of_antimicrobials.R
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
library(dplyr)

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data-raw/_reproduction scripts/reproduction_of_antivirals.R
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
library(dplyr)

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data-raw/_reproduction scripts/reproduction_of_clinical_breakpoints.R
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
# This script runs in 20-30 minutes and renews all guidelines of CLSI and EUCAST!

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data-raw/_reproduction scripts/reproduction_of_dosage.R
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
library(dplyr)

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data-raw/_reproduction scripts/reproduction_of_example_isolates_unclean.R
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@ -24,7 +24,7 @@
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
patients <- unlist(lapply(LETTERS, paste0, 1:10))

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data-raw/_reproduction scripts/reproduction_of_intrinsic_resistant.R
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@ -24,7 +24,7 @@
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
library(AMR)

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data-raw/_reproduction scripts/reproduction_of_microorganisms.R
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@ -24,7 +24,7 @@
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
# ! THIS SCRIPT REQUIRES AT LEAST 16 GB RAM !

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data-raw/_reproduction scripts/reproduction_of_microorganisms.groups.R
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@ -24,7 +24,7 @@
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# how to conduct AMR data analysis: https://amr-for-r.org/ #
# ==================================================================== #
# This data set is being used in the clinical_breakpoints data set, and thus by as.sir().