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@@ -39,7 +39,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9037</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9043</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@@ -194,7 +194,7 @@
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.svg" class="logo" alt=""><h1>Data sets for download / own use</h1>
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<h4 data-toc-skip class="date">31 May 2024</h4>
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<h4 data-toc-skip class="date">10 June 2024</h4>
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<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
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<div class="d-none name"><code>datasets.Rmd</code></div>
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@@ -526,15 +526,15 @@ Set Name ‘Microorganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a hre
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<h2 id="antibiotics-antibiotic-antifungal-drugs">
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<code>antibiotics</code>: Antibiotic (+Antifungal) Drugs<a class="anchor" aria-label="anchor" href="#antibiotics-antibiotic-antifungal-drugs"></a>
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</h2>
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<p>A data set with 483 rows and 14 columns, containing the following
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<p>A data set with 484 rows and 14 columns, containing the following
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column names:<br><em>ab</em>, <em>cid</em>, <em>name</em>, <em>group</em>, <em>atc</em>,
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<em>atc_group1</em>, <em>atc_group2</em>, <em>abbreviations</em>,
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<em>synonyms</em>, <em>oral_ddd</em>, <em>oral_units</em>,
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<em>iv_ddd</em>, <em>iv_units</em>, and <em>loinc</em>.</p>
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<p>This data set is in R available as <code>antibiotics</code>, after
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you load the <code>AMR</code> package.</p>
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<p>It was last updated on 24 February 2024 14:16:52 UTC. Find more info
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about the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
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<p>It was last updated on 8 June 2024 15:35:25 UTC. Find more info about
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the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
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<p><strong>Direct download links:</strong></p>
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<ul>
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<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.rds" class="external-link">original
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@@ -547,10 +547,10 @@ text file</a> (0.1 MB)<br>
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Excel workbook</a> (73 kB)<br>
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</li>
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<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.feather" class="external-link">Apache
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Feather file</a> (0.1 MB)<br>
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Feather file</a> (0.2 MB)<br>
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</li>
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<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.parquet" class="external-link">Apache
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Parquet file</a> (0.1 MB)<br>
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Parquet file</a> (0 kB)<br>
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</li>
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<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.xpt" class="external-link">SAS
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transport (XPT) file</a> (1.5 MB)<br>
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@@ -1560,8 +1560,8 @@ column names:<br><em>date</em>, <em>patient</em>, <em>age</em>, <em>gender</em>,
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<em>MUP</em>, and <em>RIF</em>.</p>
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<p>This data set is in R available as <code>example_isolates</code>,
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after you load the <code>AMR</code> package.</p>
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<p>It was last updated on 21 January 2023 22:47:20 UTC. Find more info
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about the structure of this data set <a href="https://msberends.github.io/AMR/reference/example_isolates.html">here</a>.</p>
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<p>It was last updated on 9 June 2024 09:31:04 UTC. Find more info about
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the structure of this data set <a href="https://msberends.github.io/AMR/reference/example_isolates.html">here</a>.</p>
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<div class="section level3">
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<h3 id="source-6">Source<a class="anchor" aria-label="anchor" href="#source-6"></a>
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</h3>
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