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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9015</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9018</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 4 128 4 4 2 0.25 0.002 2 128 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 128 0.5 0.005 0.025 4 256 64 16 16 0.01 0.25 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.125 0.002 0.0625 16 32 0.25 0.005 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 32 0.025 0.025 0.01 16 0.25 32 0.005 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] >=128 0.002 0.01 0.002 8 <=0.001 0.01 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 9 27 42 18 9 46 39 38 20 26 48 6 47 40 23 13 29 22 6 8 16 40 20 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 39 44 20 34 35 49 41 9 45 26 38 38 43 44 43 27 44 29 42 27 11 46 7 43 46</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S I I S S S I R R I R I I S R R R R I I S R I I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I R S S R R I S R S S S R R I I I R S I R S I R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.125 0.025 0.001 0.01 64 0.125 0.01 2 2 64 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.025 0.25 0.125 16 8 0.125 0.002 4 0.025 128 256 0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 0.0625 0.01 1 0.25 0.125 0.005 0.125 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.025 0.125 1 0.005 0.25 0.025 32 0.25 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 32 0.0625 0.125 0.01 0.125 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 32 1 16 2 4 32 32 32 2 4 2 16 1 16 16 2 16 2 8 8 1 8 32 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 2 8 2 4 <=0.5 <=0.5 >=16 >=16 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 4 >=16 1 4 <=0.5 4 2 1 2 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.0625 0.25 4 0.5 0.5 2 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 0.5 <=0.0625 <=0.0625 0.25 0.125 8 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 0.25 0.25 0.5 4 <=0.0625 0.5 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] <=0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.25 1 <=0.025 2 2 0.125 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 <=0.025 1 0.5 0.125 >=4 >=4 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.5 <=0.025 <=0.025 0.25 0.5 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 40 46 17 10 19 38 43 35 33 44 9 22 30 24 49 11 48 8 18 8 12 21 24 33</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 34 36 16 21 47 29 46 32 45 27 45 25 37 42 36 34 30 49 28 22 45 46 41 34</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 13 15 12 15 17 11 14 17 15 15 13 13 13 13 13 11 17 16 13 12 13 13 12 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 14 14 11 13 11 16 17 12 11 11 15 15 16 14 11 12 13 14 14 16 17 14 16 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 23 23 18 25 24 16 19 20 22 15 22 23 24 21 24 23 17 22 17 23 27 23 26 19</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 19 26 21 24 27 23 22 19 25 23 27 25 25 21 20 20 27 21 19 26 22 26 27 24</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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