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(v1.7.1.9051) updated taxonomy, updated git branch name

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dr. M.S. (Matthijs) Berends
2021-10-06 13:23:57 +02:00
parent 8f5e5a3fc2
commit 37e6e35ec4
139 changed files with 2694 additions and 1862 deletions
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vignettes/datasets.Rmd
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@ -38,7 +38,7 @@ download_txt <- function(filename) {
msg <- paste0("It was last updated on ",
trimws(format(file.mtime(paste0("../data/", filename, ".rda")), "%e %B %Y %H:%M:%S %Z", tz = "UTC")),
". Find more info about the structure of this data set [here](https://msberends.github.io/AMR/reference/", ifelse(filename == "antivirals", "antibiotics", filename), ".html).\n")
github_base <- "https://github.com/msberends/AMR/raw/master/data-raw/"
github_base <- "https://github.com/msberends/AMR/raw/main/data-raw/"
filename <- paste0("../data-raw/", filename)
txt <- paste0(filename, ".txt")
rds <- paste0(filename, ".rds")