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dr. M.S. (Matthijs) Berends
2022-08-26 22:25:15 +02:00
parent 4da32e3d40
commit 3864ab2fb8
48 changed files with 188 additions and 175 deletions
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R/guess_ab_col.R
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@ -311,7 +311,7 @@ get_ab_from_namespace <- function(x, cols_ab) {
x_new <- character()
for (val in x) {
if (paste0("AB_", val) %in% ls(envir = asNamespace("AMR"))) {
# antibiotic group names, as defined in data-raw/_internals.R, such as `AB_CARBAPENEMS`
# antibiotic group names, as defined in data-raw/pre-commit-hook.R, such as `AB_CARBAPENEMS`
val <- eval(parse(text = paste0("AB_", val)), envir = asNamespace("AMR"))
} else if (val %in% AB_lookup$ab) {
# separate drugs, such as `AMX`