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dr. M.S. (Matthijs) Berends
2019-05-13 10:10:16 +02:00
parent 0444c4ed9d
commit 38a4421450
36 changed files with 475 additions and 213 deletions
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11
man/guess_ab_col.Rd
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@ -4,15 +4,18 @@
\alias{guess_ab_col}
\title{Guess antibiotic column}
\usage{
guess_ab_col(tbl = NULL, col = NULL, verbose = FALSE)
guess_ab_col(x = NULL, search_string = NULL, verbose = FALSE)
}
\arguments{
\item{tbl}{a \code{data.frame}}
\item{x}{a \code{data.frame}}
\item{col}{a character to look for}
\item{search_string}{a text to search \code{x} for}
\item{verbose}{a logical to indicate whether additional info should be printed}
}
\value{
A column name of \code{x}, or \code{NULL} when no result is found.
}
\description{
This tries to find a column name in a data set based on information from the \code{\link{antibiotics}} data set. Also supports WHONET abbreviations. You can look for an antibiotic (trade) name or abbreviation and it will search the \code{data.frame} for any column containing a name or ATC code of that antibiotic.
}
@ -31,7 +34,7 @@ guess_ab_col(df, "J01AA07") # ATC code of tetracycline
# [1] "tetr"
guess_ab_col(df, "J01AA07", verbose = TRUE)
# using column `tetr` for col "J01AA07"
# Note: Using column `tetr` as input for "J01AA07".
# [1] "tetr"
# WHONET codes