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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9121</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9122</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,44 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=64 16 0.25 0.5 16 2 0.125 0.125 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 0.0625 16 <=0.001 <=0.001 >=64 32 0.01 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 >=64 0.005 4 1 0.01 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 1 32 8 32 0.0625 8 2 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 <=0.001 64 64 16 4 <=0.001 64 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 1 0.002 0.25 256 0.0625 0.0625 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 25 43 6 40 45 43 47 21 21 35 44 19 41 11 20 25 39 16 47 35 49 40 12 6</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 40 47 29 40 17 8 22 45 49 26 35 9 50 48 31 18 47 43 41 45 47 29 10 49 49</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I R I S R S I R I S R R S R R R I I S S R S I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R R S I I S R I R S S S S R I I R R S I I R R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 128 4 0.001 0.002 128 0.01 0.025 0.002 0.005 2 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 0.025 0.002 4 1 0.5 16 0.005 64 1 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.005 64 2 0.5 0.25 2 0.001 0.01 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 128 1 16 0.5 0.0625 0.25 256 1 64 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 64 32 0.001 0.001 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 4 4 2 >=16 8 >=16 4 8 2 2 <=1 4 <=1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] <=1 <=1 8 4 >=16 >=16 2 <=1 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 64 2 4 1 <=0.25 32 1 8 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 32 4 2 0.5 2 32 32 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 8 2 16 32 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 4 0.025 0.5 2 >=8 4 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.025 >=8 0.5 0.5 0.025 0.125 0.0625 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 4 1 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 >=16 <=0.0625 2 2 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 1 0.25 4 <=0.0625 2 2 4 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 0.5 2 4 0.125 0.25 4 0.125 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 20 33 33 26 20 49 22 12 42 40 29 45 42 48 30 50 37 21 27 50 50 43 49 46</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 43 40 48 24 23 43 21 33 10 16 45 18 30 50 39 23 48 44 16 41 15 50 43 35</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 13 13 16 16 11 12 15 14 11 14 15 11 12 11 13 15 13 17 17 16 11 13 11 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 15 13 17 16 16 14 13 11 16 11 15 11 15 15 11 13 12 15 17 12 11 13 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 16 21 16 18 26 19 21 19 18 16 19 17 18 19 21 18 23 26 25 18 19 24 23 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 23 27 15 19 19 18 18 22 22 21 23 27 18 27 23 25 15 26 22 20 24 16 26 19 17</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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