diff --git a/DESCRIPTION b/DESCRIPTION index e762f865..f6d90a95 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 1.7.1.9016 +Version: 1.7.1.9017 Date: 2021-07-08 Title: Antimicrobial Resistance Data Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index b736983d..55b4c5a3 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# `AMR` 1.7.1.9016 +# `AMR` 1.7.1.9017 ## Last updated: 8 July 2021 ### Changed diff --git a/R/ab_class_selectors.R b/R/ab_class_selectors.R index d8a9ecf2..306eac65 100644 --- a/R/ab_class_selectors.R +++ b/R/ab_class_selectors.R @@ -292,7 +292,7 @@ ureidopenicillins <- function(only_rsi_columns = FALSE) { ab_selector <- function(function_name, only_rsi_columns, - only_treatable, + only_treatable = FALSE, ab_class = NULL) { # get_current_data() has to run each time, for cases where e.g., filter() and select() are used in same call # but it only takes a couple of milliseconds diff --git a/data-raw/AMR_latest.tar.gz b/data-raw/AMR_latest.tar.gz index 32e22a1b..639ed4ef 100644 Binary files a/data-raw/AMR_latest.tar.gz and b/data-raw/AMR_latest.tar.gz differ diff --git a/docs/404.html b/docs/404.html index 033a552a..4faddf8a 100644 --- a/docs/404.html +++ b/docs/404.html @@ -81,7 +81,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 1e6e6123..0d494d67 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -81,7 +81,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017 diff --git a/docs/articles/datasets.html b/docs/articles/datasets.html index 935525c9..c3fe53b9 100644 --- a/docs/articles/datasets.html +++ b/docs/articles/datasets.html @@ -39,7 +39,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017 diff --git a/docs/articles/index.html b/docs/articles/index.html index 5971007d..c84e597b 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017 diff --git a/docs/authors.html b/docs/authors.html index 31070c03..9733f61b 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -81,7 +81,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017 diff --git a/docs/index.html b/docs/index.html index 0f352a61..e787f33d 100644 --- a/docs/index.html +++ b/docs/index.html @@ -42,7 +42,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017 diff --git a/docs/news/index.html b/docs/news/index.html index 6b6cb02e..9eb9a769 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017 @@ -236,9 +236,9 @@ Source: NEWS.md -
-

- Unreleased AMR 1.7.1.9016

+
+

+ Unreleased AMR 1.7.1.9017

Last updated: 8 July 2021 diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 0aa62aab..c86399ae 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -12,7 +12,7 @@ articles: datasets: datasets.html resistance_predict: resistance_predict.html welcome_to_AMR: welcome_to_AMR.html -last_built: 2021-07-08T20:22Z +last_built: 2021-07-08T21:03Z urls: reference: https://msberends.github.io/AMR//reference article: https://msberends.github.io/AMR//articles diff --git a/docs/reference/index.html b/docs/reference/index.html index 63e92da0..012705f2 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017

diff --git a/docs/survey.html b/docs/survey.html index 136835e7..98220aa2 100644 --- a/docs/survey.html +++ b/docs/survey.html @@ -81,7 +81,7 @@ AMR (for R) - 1.7.1.9016 + 1.7.1.9017