P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-05-31 17:41:49 +02:00
Code Releases Activity

Built site for AMR@3.0.1.9053: 23beebc

Browse Source
This commit is contained in:
github-actions
2026-04-30 08:07:42 +00:00
parent 425f4ad827
commit 3a3027f171
100 changed files with 742 additions and 649 deletions
Download Patch File Download Diff File Expand all files Collapse all files

18
CLAUDE.md
View File

@@ -23,6 +23,7 @@ Concentration (MIC) and disk diffusion handling - Multilingual output
All commands run inside an R session:
``` r
# Rebuild documentation (roxygen2 → .Rd files + NAMESPACE)
devtools::document()
@@ -94,14 +95,14 @@ R CMD check AMR
The package defines five S3 classes with full print/format/plot/vctrs
support:
| Class | Created by | Represents |
|----------|-----------------------------------------------------------|----------------------------------|
| `<mo>` | [`as.mo()`](https://amr-for-r.org/reference/as.mo.md) | Microorganism code |
| `<ab>` | [`as.ab()`](https://amr-for-r.org/reference/as.ab.md) | Antimicrobial drug code |
| `<av>` | [`as.av()`](https://amr-for-r.org/reference/as.av.md) | Antiviral drug code |
| `<sir>` | [`as.sir()`](https://amr-for-r.org/reference/as.sir.md) | SIR value (S/I/R/SDD) |
| `<mic>` | [`as.mic()`](https://amr-for-r.org/reference/as.mic.md) | Minimum inhibitory concentration |
| `<disk>` | [`as.disk()`](https://amr-for-r.org/reference/as.disk.md) | Disk diffusion diameter |
| Class | Created by | Represents |
|----|----|----|
| `<mo>` | [`as.mo()`](https://amr-for-r.org/reference/as.mo.md) | Microorganism code |
| `<ab>` | [`as.ab()`](https://amr-for-r.org/reference/as.ab.md) | Antimicrobial drug code |
| `<av>` | [`as.av()`](https://amr-for-r.org/reference/as.av.md) | Antiviral drug code |
| `<sir>` | [`as.sir()`](https://amr-for-r.org/reference/as.sir.md) | SIR value (S/I/R/SDD) |
| `<mic>` | [`as.mic()`](https://amr-for-r.org/reference/as.mic.md) | Minimum inhibitory concentration |
| `<disk>` | [`as.disk()`](https://amr-for-r.org/reference/as.disk.md) | Disk diffusion diameter |
## Data Files
@@ -125,6 +126,7 @@ integrations (ggplot2, dplyr, data.table, tidymodels, cli, crayon, etc.)
are listed in `Suggests` and guarded with:
``` r
if (requireNamespace("pkg", quietly = TRUE)) { ... }
```