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2026-04-30 08:07:42 +00:00
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reference/first_isolate.md
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@@ -209,27 +209,27 @@ subspecies).
All mentioned methods are covered in the `first_isolate()` function:
| | |
|-------------------------------------------------|--------------------------------------------------------|
| **Method** | **Function to apply** |
| **Isolate-based** | `first_isolate(x, method = "isolate-based")` |
| *(= all isolates)* | |
| | |
| | |
| **Patient-based** | `first_isolate(x, method = "patient-based")` |
| *(= first isolate per patient)* | |
| | |
| | |
| **Episode-based** | `first_isolate(x, method = "episode-based")`, or: |
| *(= first isolate per episode)* | |
| \- 7-Day interval from initial isolate | \- `first_isolate(x, method = "e", episode_days = 7)` |
| \- 30-Day interval from initial isolate | \- `first_isolate(x, method = "e", episode_days = 30)` |
| | |
| | |
| **Phenotype-based** | `first_isolate(x, method = "phenotype-based")`, or: |
| *(= first isolate per phenotype)* | |
| \- Major difference in any antimicrobial result | \- `first_isolate(x, type = "points")` |
| \- Any difference in key antimicrobial results | \- `first_isolate(x, type = "keyantimicrobials")` |
| | |
|----|----|
| **Method** | **Function to apply** |
| **Isolate-based** | `first_isolate(x, method = "isolate-based")` |
| *(= all isolates)* | |
| | |
| | |
| **Patient-based** | `first_isolate(x, method = "patient-based")` |
| *(= first isolate per patient)* | |
| | |
| | |
| **Episode-based** | `first_isolate(x, method = "episode-based")`, or: |
| *(= first isolate per episode)* | |
| \- 7-Day interval from initial isolate | \- `first_isolate(x, method = "e", episode_days = 7)` |
| \- 30-Day interval from initial isolate | \- `first_isolate(x, method = "e", episode_days = 30)` |
| | |
| | |
| **Phenotype-based** | `first_isolate(x, method = "phenotype-based")`, or: |
| *(= first isolate per phenotype)* | |
| \- Major difference in any antimicrobial result | \- `first_isolate(x, type = "points")` |
| \- Any difference in key antimicrobial results | \- `first_isolate(x, type = "keyantimicrobials")` |
**Isolate-based**