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documentation fix

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dr. M.S. (Matthijs) Berends 2022-11-05 08:18:06 +01:00
parent d20caae54b
commit 3b652983b7
4 changed files with 5 additions and 6 deletions
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4
DESCRIPTION
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@ -1,6 +1,6 @@
Package: AMR Package: AMR
Version: 1.8.2.9041 Version: 1.8.2.9042
Date: 2022-10-31 Date: 2022-11-05
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by data analysis and to work with microbial and antimicrobial properties by

2
NEWS.md
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# AMR 1.8.2.9041 # AMR 1.8.2.9042
This version will eventually become v2.0! We're happy to reach a new major milestone soon! This version will eventually become v2.0! We're happy to reach a new major milestone soon!

3
R/age.R
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@ -143,7 +143,6 @@ age <- function(x, reference = Sys.Date(), exact = FALSE, na.rm = FALSE, ...) {
#' @return Ordered [factor] #' @return Ordered [factor]
#' @seealso To determine ages, based on one or more reference dates, use the [age()] function. #' @seealso To determine ages, based on one or more reference dates, use the [age()] function.
#' @export #' @export
#' @examples #' @examples
#' ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21) #' ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
#' #'
@ -167,7 +166,7 @@ age <- function(x, reference = Sys.Date(), exact = FALSE, na.rm = FALSE, ...) {
#' #'
#' \donttest{ #' \donttest{
#' # resistance of ciprofloxacin per age group #' # resistance of ciprofloxacin per age group
#' if (require("dplyr")) { #' if (require("dplyr") && require("ggplot2")) {
#' example_isolates %>% #' example_isolates %>%
#' filter_first_isolate() %>% #' filter_first_isolate() %>%
#' filter(mo == as.mo("Escherichia coli")) %>% #' filter(mo == as.mo("Escherichia coli")) %>%

2
man/age_groups.Rd
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@ -56,7 +56,7 @@ age_groups(ages, "children")
\donttest{ \donttest{
# resistance of ciprofloxacin per age group # resistance of ciprofloxacin per age group
if (require("dplyr")) { if (require("dplyr") && require("ggplot2")) {
example_isolates \%>\% example_isolates \%>\%
filter_first_isolate() \%>\% filter_first_isolate() \%>\%
filter(mo == as.mo("Escherichia coli")) \%>\% filter(mo == as.mo("Escherichia coli")) \%>\%