vignettes/datasets.Rmd
datasets.Rmd
NEWS.md
- AMR
1.7.1.9009AMR
1.7.1.9010dplyr::filter()
and immediately after in dplyr::select()
)antibiotics
data setantibiotics
data setggplot2::autoplot()
generic for classes <mic>
, <disk>
, <rsi>
and <resistance_predict>
NA
s for old MO codes when running as.mo()
on themrandom_mic()
, random_disk()
and random_rsi()
are now enforcedas.rsi()
can now correct for textual input (such as “Susceptible”, “Resistant”) in Dutch, English, French, German, Italian, Portuguese and Spanishcount_*()
, proportion_*()
functions (and resistant()
and susceptible()
) when they return NA because of too few test results. The warnings now include the official drug name and if used, the dplyr
group name.count_*()
, proportion_*()
function (or resistant()
or susceptible()
), the dplyr
group will be shown, if availablemo_name()
, mo_fullname()
, mo_shortname()
, mo_genus()
or mo_family()
+betalactams()
as additional antbiotic column selector and function filter_betalactams()
as additional antbiotic column filter. The group of betalactams consists of all carbapenems, cephalosporins and penicillins.ggplot()
method for resistance_predict()
+ggplot()
method for resistance_predict()
Support for custom MDRO guidelines, using the new custom_mdro_guideline()
function, please see mdro()
for additional info
ggplot()
generics for classes <mic>
and <disk>
ggplot()
generics for classes <mic>
and <disk>
Function mo_is_yeast()
, which determines whether a microorganism is a member of the taxonomic class Saccharomycetes or the taxonomic order Saccharomycetales:
@@ -479,7 +481,7 @@
translate
)plot()
and with ggplot2 using ggplot()
on any vector of MIC and disk diffusion valuesplot()
and with ggplot2 using ggplot()
on any vector of MIC and disk diffusion valuesmicroorganisms
data set