mirror of
https://github.com/msberends/AMR.git
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(v3.0.1.9074) You go girl
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2
.github/workflows/check-old-tinytest.yaml
vendored
2
.github/workflows/check-old-tinytest.yaml
vendored
@@ -49,7 +49,7 @@ jobs:
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# Test all old versions of R >= 3.0, we support them all!
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# For these old versions, dependencies and vignettes will not be checked.
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# For recent R versions, see check-recent.yaml (r-lib and tidyverse support the latest 5 major R releases).
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- {os: ubuntu-latest, r: '3.6', allowfail: false}
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# - {os: ubuntu-latest, r: '3.6', allowfail: false}
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# - {os: windows-latest, r: '3.5', allowfail: false} # always fails, horrible with UTF-8
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# - {os: ubuntu-latest, r: '3.4', allowfail: false} # 3.1-3.4 now always fails with Error in grep(warn_re, lines, invert = TRUE, value = TRUE) attempt to set index 46/46 in SET_STRING_ELT
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# - {os: ubuntu-latest, r: '3.3', allowfail: false}
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@@ -1,5 +1,5 @@
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Package: AMR
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Version: 3.0.1.9073
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Version: 3.0.1.9074
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Date: 2026-06-26
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Title: Antimicrobial Resistance Data Analysis
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Description: Functions to simplify and standardise antimicrobial resistance (AMR)
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2
NEWS.md
2
NEWS.md
@@ -1,4 +1,4 @@
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# AMR 3.0.1.9073
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# AMR 3.0.1.9074
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Planned as v3.1.0, end of June 2026.
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@@ -73,15 +73,12 @@ base._libPaths(r_lib_path)
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if not isinstalled('AMR', lib_loc=r_lib_path):
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print(f"AMR: Installing latest AMR R package to {r_lib_path}...", flush=True)
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utils.install_packages(
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'remotes',
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StrVector(['remotes', 'desc']),
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repos='https://cloud.r-project.org',
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lib=r_lib_path,
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dependencies=True,
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quiet=True
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)
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rint(f"AMR: Installed 'remotes'", flush=True)
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remotes = importr('remotes', lib_loc=r_lib_path)
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rint(f"AMR: Loaded 'remotes'", flush=True)
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remotes.install_github('msberends/AMR', lib=r_lib_path, quiet=True)
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# Retrieve Python AMR version
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@@ -99,10 +96,9 @@ if r_amr_version != python_amr_version:
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try:
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print(f"AMR: Updating AMR package in {r_lib_path}...", flush=True)
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utils.install_packages(
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'remotes',
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StrVector(['remotes', 'desc']),
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repos='https://cloud.r-project.org',
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lib=r_lib_path,
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dependencies=True,
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quiet=True
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)
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remotes = importr('remotes', lib_loc=r_lib_path)
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