P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-06-29 19:36:19 +02:00
Code Releases Activity

(v3.0.1.9074) You go girl

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2026-06-26 11:58:38 +02:00
parent 4ca7fdf3d4
commit 3c17679382
4 changed files with 5 additions and 9 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
.github/workflows/check-old-tinytest.yaml vendored
View File

@@ -49,7 +49,7 @@ jobs:
# Test all old versions of R >= 3.0, we support them all! # Test all old versions of R >= 3.0, we support them all!
# For these old versions, dependencies and vignettes will not be checked. # For these old versions, dependencies and vignettes will not be checked.
# For recent R versions, see check-recent.yaml (r-lib and tidyverse support the latest 5 major R releases). # For recent R versions, see check-recent.yaml (r-lib and tidyverse support the latest 5 major R releases).
- {os: ubuntu-latest, r: '3.6', allowfail: false} # - {os: ubuntu-latest, r: '3.6', allowfail: false}
# - {os: windows-latest, r: '3.5', allowfail: false} # always fails, horrible with UTF-8 # - {os: windows-latest, r: '3.5', allowfail: false} # always fails, horrible with UTF-8
# - {os: ubuntu-latest, r: '3.4', allowfail: false} # 3.1-3.4 now always fails with Error in grep(warn_re, lines, invert = TRUE, value = TRUE) attempt to set index 46/46 in SET_STRING_ELT # - {os: ubuntu-latest, r: '3.4', allowfail: false} # 3.1-3.4 now always fails with Error in grep(warn_re, lines, invert = TRUE, value = TRUE) attempt to set index 46/46 in SET_STRING_ELT
# - {os: ubuntu-latest, r: '3.3', allowfail: false} # - {os: ubuntu-latest, r: '3.3', allowfail: false}

2
DESCRIPTION
View File

@@ -1,5 +1,5 @@
Package: AMR Package: AMR
Version: 3.0.1.9073 Version: 3.0.1.9074
Date: 2026-06-26 Date: 2026-06-26
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)

2
NEWS.md
View File

@@ -1,4 +1,4 @@
# AMR 3.0.1.9073 # AMR 3.0.1.9074
Planned as v3.1.0, end of June 2026. Planned as v3.1.0, end of June 2026.

8
data-raw/_generate_python_wrapper.sh
View File

@@ -73,15 +73,12 @@ base._libPaths(r_lib_path)
if not isinstalled('AMR', lib_loc=r_lib_path): if not isinstalled('AMR', lib_loc=r_lib_path):
print(f"AMR: Installing latest AMR R package to {r_lib_path}...", flush=True) print(f"AMR: Installing latest AMR R package to {r_lib_path}...", flush=True)
utils.install_packages( utils.install_packages(
'remotes', StrVector(['remotes', 'desc']),
repos='https://cloud.r-project.org', repos='https://cloud.r-project.org',
lib=r_lib_path, lib=r_lib_path,
dependencies=True,
quiet=True quiet=True
) )
rint(f"AMR: Installed 'remotes'", flush=True)
remotes = importr('remotes', lib_loc=r_lib_path) remotes = importr('remotes', lib_loc=r_lib_path)
rint(f"AMR: Loaded 'remotes'", flush=True)
remotes.install_github('msberends/AMR', lib=r_lib_path, quiet=True) remotes.install_github('msberends/AMR', lib=r_lib_path, quiet=True)
# Retrieve Python AMR version # Retrieve Python AMR version
@@ -99,10 +96,9 @@ if r_amr_version != python_amr_version:
try: try:
print(f"AMR: Updating AMR package in {r_lib_path}...", flush=True) print(f"AMR: Updating AMR package in {r_lib_path}...", flush=True)
utils.install_packages( utils.install_packages(
'remotes', StrVector(['remotes', 'desc']),
repos='https://cloud.r-project.org', repos='https://cloud.r-project.org',
lib=r_lib_path, lib=r_lib_path,
dependencies=True,
quiet=True quiet=True
) )
remotes = importr('remotes', lib_loc=r_lib_path) remotes = importr('remotes', lib_loc=r_lib_path)