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@ -39,7 +39,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9059</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9060</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -194,7 +194,7 @@
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.svg" class="logo" alt=""><h1>Data sets for download / own use</h1>
<h4 data-toc-skip class="date">17 June 2024</h4>
<h4 data-toc-skip class="date">19 June 2024</h4>
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
<div class="d-none name"><code>datasets.Rmd</code></div>
@ -905,25 +905,25 @@ inhibitors</td>
<code>clinical_breakpoints</code>: Interpretation from MIC values
&amp; disk diameters to SIR<a class="anchor" aria-label="anchor" href="#clinical_breakpoints-interpretation-from-mic-values-disk-diameters-to-sir"></a>
</h2>
<p>A data set with 34 085 rows and 13 columns, containing the following
<p>A data set with 34 063 rows and 14 columns, containing the following
column names:<br><em>guideline</em>, <em>type</em>, <em>host</em>, <em>method</em>,
<em>site</em>, <em>mo</em>, <em>rank_index</em>, <em>ab</em>,
<em>ref_tbl</em>, <em>disk_dose</em>, <em>breakpoint_S</em>,
<em>breakpoint_R</em>, and <em>uti</em>.</p>
<em>breakpoint_R</em>, <em>uti</em>, and <em>is_SDD</em>.</p>
<p>This data set is in R available as <code>clinical_breakpoints</code>,
after you load the <code>AMR</code> package.</p>
<p>It was last updated on 14 June 2024 20:39:01 UTC. Find more info
<p>It was last updated on 19 June 2024 13:08:23 UTC. Find more info
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/clinical_breakpoints.html">here</a>.</p>
<p><strong>Direct download links:</strong></p>
<ul>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/clinical_breakpoints.rds" class="external-link">original
R Data Structure (RDS) file</a> (71 kB)<br>
R Data Structure (RDS) file</a> (70 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/clinical_breakpoints.txt" class="external-link">tab-separated
text file</a> (2.9 MB)<br>
text file</a> (3.1 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/clinical_breakpoints.xlsx" class="external-link">Microsoft
Excel workbook</a> (1.6 MB)<br>
Excel workbook</a> (1.7 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/clinical_breakpoints.feather" class="external-link">Apache
Feather file</a> (4.9 MB)<br>
@ -932,13 +932,13 @@ Feather file</a> (4.9 MB)<br>
Parquet file</a> (0 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/clinical_breakpoints.xpt" class="external-link">SAS
transport (XPT) file</a> (9.3 MB)<br>
transport (XPT) file</a> (9.6 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/clinical_breakpoints.sav" class="external-link">IBM
SPSS Statistics data file</a> (5.6 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/clinical_breakpoints.dta" class="external-link">Stata
DTA file</a> (9.2 MB)</li>
DTA file</a> (9.3 MB)</li>
</ul>
<div class="section level3">
<h3 id="source-3">Source<a class="anchor" aria-label="anchor" href="#source-3"></a>
@ -975,17 +975,18 @@ use.</p>
<col width="6%">
<col width="3%">
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<col width="4%">
<col width="3%">
<col width="7%">
<col width="14%">
<col width="6%">
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<col width="15%">
<col width="8%">
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<col width="13%">
<col width="5%">
<col width="2%">
<col width="14%">
<col width="8%">
<col width="7%">
<col width="7%">
<col width="6%">
<col width="6%">
<col width="3%">
<col width="3%">
</colgroup>
<thead><tr class="header">
@ -1004,6 +1005,7 @@ use.</p>
<th align="center">breakpoint_S</th>
<th align="center">breakpoint_R</th>
<th align="center">uti</th>
<th align="center">is_SDD</th>
</tr></thead>
<tbody>
<tr class="odd">
@ -1022,6 +1024,7 @@ use.</p>
<td align="center">26.000</td>
<td align="center">20.000</td>
<td align="center">FALSE</td>
<td align="center">FALSE</td>
</tr>
<tr class="even">
<td align="center">EUCAST 2024</td>
@ -1039,6 +1042,7 @@ use.</p>
<td align="center">1.000</td>
<td align="center">4.000</td>
<td align="center">FALSE</td>
<td align="center">FALSE</td>
</tr>
<tr class="odd">
<td align="center">EUCAST 2024</td>
@ -1056,6 +1060,7 @@ use.</p>
<td align="center">26.000</td>
<td align="center">26.000</td>
<td align="center">FALSE</td>
<td align="center">FALSE</td>
</tr>
<tr class="even">
<td align="center">EUCAST 2024</td>
@ -1073,6 +1078,7 @@ use.</p>
<td align="center">0.125</td>
<td align="center">0.125</td>
<td align="center">FALSE</td>
<td align="center">FALSE</td>
</tr>
<tr class="odd">
<td align="center">EUCAST 2024</td>
@ -1090,6 +1096,7 @@ use.</p>
<td align="center">26.000</td>
<td align="center">26.000</td>
<td align="center">FALSE</td>
<td align="center">FALSE</td>
</tr>
<tr class="even">
<td align="center">EUCAST 2024</td>
@ -1107,6 +1114,7 @@ use.</p>
<td align="center">4.000</td>
<td align="center">4.000</td>
<td align="center">FALSE</td>
<td align="center">FALSE</td>
</tr>
</tbody>
</table>