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llms.txt

@@ -266,6 +266,10 @@ example_isolates %>%
   summarise(across(c(GEN, TOB),
                    list(total_R = resistance,
                         conf_int = function(x) sir_confidence_interval(x, collapse = "-"))))
+#> ℹ `resistance()` assumes the EUCAST guideline and thus considers the 'I'
+#>   category susceptible. Set the `guideline` argument or the `AMR_guideline`
+#>   option to either "CLSI" or "EUCAST", see `?AMR-options`.
+#> ℹ This message will be shown once per session.
 #> # A tibble: 3 × 5
 #>   ward       GEN_total_R GEN_conf_int TOB_total_R TOB_conf_int
 #>   <chr>            <dbl> <chr>              <dbl> <chr>       
@@ -726,6 +730,7 @@ or determine multi-drug resistant microorganisms (MDRO,
   [`nitrofurans()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
   [`oxazolidinones()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
   [`penicillins()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
+  [`peptides()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
   [`phenicols()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
   [`phosphonics()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
   [`polymyxins()`](https://amr-for-r.org/reference/antimicrobial_selectors.md)
@@ -858,7 +863,7 @@ information about how to work with functions in this package.
 - [`antimicrobials`](https://amr-for-r.org/reference/antimicrobials.md)
   [`antibiotics`](https://amr-for-r.org/reference/antimicrobials.md)
   [`antivirals`](https://amr-for-r.org/reference/antimicrobials.md) :
-  Data Sets with 618 Antimicrobial Drugs
+  Data Sets with 624 Antimicrobial Drugs
 - [`clinical_breakpoints`](https://amr-for-r.org/reference/clinical_breakpoints.md)
   : Data Set with Clinical Breakpoints for SIR Interpretation
 - [`example_isolates`](https://amr-for-r.org/reference/example_isolates.md)