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2026-03-03 14:52:15 +00:00
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reference/as.sir.md
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@@ -660,10 +660,10 @@ sir_interpretation_history()
#> # A tibble: 4 × 18
#> datetime index method ab_given mo_given host_given input_given
#> <dttm> <int> <chr> <chr> <chr> <chr> <chr>
#> 1 2026-02-27 16:22:03 1 MIC amoxicillin Escherich… human 8
#> 2 2026-02-27 16:22:03 1 MIC cipro Escherich… human 0.256
#> 3 2026-02-27 16:22:03 1 DISK tobra Escherich… human 16
#> 4 2026-02-27 16:22:03 1 DISK genta Escherich… human 18
#> 1 2026-03-03 14:48:38 1 MIC amoxicillin Escherich… human 8
#> 2 2026-03-03 14:48:39 1 MIC cipro Escherich… human 0.256
#> 3 2026-03-03 14:48:39 1 DISK tobra Escherich… human 16
#> 4 2026-03-03 14:48:39 1 DISK genta Escherich… human 18
#> # ℹ 11 more variables: ab <ab>, mo <mo>, host <chr>, input <chr>,
#> # outcome <sir>, notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>,
#> # breakpoint_S_R <chr>, site <chr>
@@ -819,10 +819,11 @@ if (require("dplyr")) {
#> Caused by warning:
#> ! Some MICs were converted to the nearest higher log2 level, following the
#> CLSI interpretation guideline.
#> Interpreting MIC values: 'antibiotic' (ASP, acetylspiramycin), CLSI 2025...
#> Interpreting disk diffusion zones: 'antibiotic' (ASP, acetylspiramycin),
#> Interpreting MIC values: 'antibiotic' (TESTAB, test Antibiotic), CLSI
#> 2025...
#> Interpreting disk diffusion zones: 'antibiotic' (TESTAB, test Antibiotic),
#> CLSI 2025...
#> Interpreting disk diffusion zones: 'antibiotic' (ASP, acetylspiramycin),
#> Interpreting disk diffusion zones: 'antibiotic' (TESTAB, test Antibiotic),
#> CLSI 2025...
#> Warning: There was 1 warning in `mutate()`.
#> ℹ In argument: `cipro = (function (x, ...) ...`.