(v3.0.1.9037) improve cli messages

man/as.mic.Rd

@@ -56,7 +56,7 @@ This class for MIC values is a quite a special data type: formally it is an orde
 
 \if{html}{\out{<div class="sourceCode">}}\preformatted{x <- random_mic(10)
 x
-#> Class 'mic'
+#> Class <mic>
 #>  [1] 16     1      8      8      64     >=128  0.0625 32     32     16
 
 is.factor(x)
@@ -72,7 +72,7 @@ median(x)
 This makes it possible to maintain operators that often come with MIC values, such ">=" and "<=", even when filtering using \link{numeric} values in data analysis, e.g.:
 
 \if{html}{\out{<div class="sourceCode">}}\preformatted{x[x > 4]
-#> Class 'mic'
+#> Class <mic>
 #> [1] 16    8     8     64    >=128 32    32    16
 
 df <- data.frame(x, hospital = "A")

man/mo_source.Rd

@@ -58,7 +58,7 @@ It has now created a file \code{"~/mo_source.rds"} with the contents of our Exce
 And now we can use it in our functions:
 
 \if{html}{\out{<div class="sourceCode">}}\preformatted{as.mo("lab_mo_ecoli")
-#> Class 'mo'
+#> Class <mo>
 #> [1] B_ESCHR_COLI
 
 mo_genus("lab_mo_kpneumoniae")
@@ -68,7 +68,7 @@ mo_genus("lab_mo_kpneumoniae")
 as.mo(c("Escherichia coli", "E. coli", "lab_mo_ecoli"))
 #> NOTE: Translation to one microorganism was guessed with uncertainty.
 #>       Use mo_uncertainties() to review it.
-#> Class 'mo'
+#> Class <mo>
 #> [1] B_ESCHR_COLI B_ESCHR_COLI B_ESCHR_COLI
 }\if{html}{\out{</div>}}
 
@@ -89,7 +89,7 @@ If we edit the Excel file by, let's say, adding row 4 like this:
 #> NOTE: Updated mo_source file '/Users/me/mo_source.rds' (0.3 kB) from
 #>       '/Users/me/Documents/ourcodes.xlsx' (9 kB), columns
 #>        "Organisation XYZ" and "mo"
-#> Class 'mo'
+#> Class <mo>
 #> [1] B_ESCHR_COLI
 
 mo_genus("lab_Staph_aureus")