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(v3.0.1.9037) improve cli messages

This commit is contained in:
2026-03-22 20:44:37 +01:00
parent 4171d5b778
commit 3d1412e8c9
20 changed files with 94 additions and 59 deletions

View File

@@ -58,7 +58,7 @@ It has now created a file \code{"~/mo_source.rds"} with the contents of our Exce
And now we can use it in our functions:
\if{html}{\out{<div class="sourceCode">}}\preformatted{as.mo("lab_mo_ecoli")
#> Class 'mo'
#> Class <mo>
#> [1] B_ESCHR_COLI
mo_genus("lab_mo_kpneumoniae")
@@ -68,7 +68,7 @@ mo_genus("lab_mo_kpneumoniae")
as.mo(c("Escherichia coli", "E. coli", "lab_mo_ecoli"))
#> NOTE: Translation to one microorganism was guessed with uncertainty.
#> Use mo_uncertainties() to review it.
#> Class 'mo'
#> Class <mo>
#> [1] B_ESCHR_COLI B_ESCHR_COLI B_ESCHR_COLI
}\if{html}{\out{</div>}}
@@ -89,7 +89,7 @@ If we edit the Excel file by, let's say, adding row 4 like this:
#> NOTE: Updated mo_source file '/Users/me/mo_source.rds' (0.3 kB) from
#> '/Users/me/Documents/ourcodes.xlsx' (9 kB), columns
#> "Organisation XYZ" and "mo"
#> Class 'mo'
#> Class <mo>
#> [1] B_ESCHR_COLI
mo_genus("lab_Staph_aureus")