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Merge branch 'master' of https://gitlab.com/msberends/AMR
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commit
3d4c4c678b
106
.gitlab-ci.yml
106
.gitlab-ci.yml
@ -1,18 +1,110 @@
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# from https://stackoverflow.com/questions/51866926
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# and https://github.com/jangorecki/r.gitlab.ci
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image: rocker/r-base
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gitlab:
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script:
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# and https://docs.gitlab.com/ce/ci/yaml/README.html
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# how the Docker+R images work: https://hub.docker.com/r/rocker/r-ver/
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stages:
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- build
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- deploy
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R 3:
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image: rocker/r-ver:3 # rocker/r-base
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stage: build
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allow_failure: false
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script:
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- apt-get update
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# install dependencies for package
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- apt-get install --yes --no-install-recommends r-cran-xml2 r-cran-testthat r-cran-devtools
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- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
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- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
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- R -e 'install.packages(c("devtools", "rlang"))'
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- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"), repos = "https://cran.rstudio.com")'
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- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
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# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
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- rm -rf vignettes
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- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
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- R CMD build . --no-build-vignettes --no-manual
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- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
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- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
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# update code coverage
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# code coverage
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- apt-get install --yes git
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- R -e "covr::codecov(token = '50ffa0aa-fee0-4f8b-a11d-8c7edc6d32ca')"
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- R -e 'covr::codecov(token = "50ffa0aa-fee0-4f8b-a11d-8c7edc6d32ca")'
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artifacts:
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paths:
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- '*.Rcheck/*'
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name: 'Latest Rcheck log'
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expire_in: '1 month'
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R 3.4:
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image: rocker/r-ver:3.4 # rocker/r-base
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stage: build
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allow_failure: true
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script:
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- apt-get update
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# install dependencies for package
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- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
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- R -e 'install.packages("devtools")'
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- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
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- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
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# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
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- rm -rf vignettes
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- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
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- R CMD build . --no-build-vignettes --no-manual
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- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
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- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
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R 3.5:
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image: rocker/r-ver:3.5 # rocker/r-base
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stage: build
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allow_failure: true
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script:
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- apt-get update
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# install dependencies for package
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- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
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- R -e 'install.packages("devtools")'
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- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
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- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
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# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
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- rm -rf vignettes
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- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
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- R CMD build . --no-build-vignettes --no-manual
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- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
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- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
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#R latest:
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# image: rocker/r-ver:latest # rocker/r-base
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# stage: build
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# allow_failure: true
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# script:
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# - apt-get update
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# install dependencies for package
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# - apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
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# - R -e 'install.packages("devtools")'
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# - R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
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# - R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
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# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
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# - rm -rf vignettes
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# - R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
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# - R CMD build . --no-build-vignettes --no-manual
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# - PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
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# - R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
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# R devel:
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# image: rocker/r-ver:devel # rocker/r-base
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# stage: build
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# allow_failure: true
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# script:
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# - apt-get update
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# install dependencies for package
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#- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
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#- R -e 'install.packages("devtools")'
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# - R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
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#- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
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# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
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#- rm -rf vignettes
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# - R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
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coverage_job:
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# image: rocker/r-ver:3
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stage: deploy
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script:
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- echo "future packaging part"
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