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(v0.7.1.9094) get_column_abx() improvement

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dr. M.S. (Matthijs) Berends
2019-10-06 21:44:08 +02:00
parent b6653a620a
commit 3d5692219e
11 changed files with 25 additions and 15 deletions
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NEWS.md
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# AMR 0.7.1.9093
# AMR 0.7.1.9094
<small>Last updated: 06-Oct-2019</small>
### Breaking
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* Printed info now distinguishes between added and changes values
* Using Verbose mode (i.e. `eucast_rules(..., verbose = TRUE)`) returns more informative and readable output
* Using factors as input now adds missing factors levels when the function changes antibiotic results
* Improved the internal auto-guessing function for determining antibiotics in your data set (`AMR:::get_column_abx()`)
* Improved the internal auto-guessing function for determining antimicrobials in your data set (`AMR:::get_column_abx()`)
* Removed class `atc` - using `as.atc()` is now deprecated in favour of `ab_atc()` and this will return a character, not the `atc` class anymore
* Removed deprecated functions `abname()`, `ab_official()`, `atc_name()`, `atc_official()`, `atc_property()`, `atc_tradenames()`, `atc_trivial_nl()`
* Fix and speed improvement for `mo_shortname()`