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(v3.0.1.9059) Update taxonomy of microorganisms

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Matthijs Berends
2026-06-23 01:38:13 +02:00
committed by GitHub
parent 0af3f84655
commit 3f9f931777
123 changed files with 121928 additions and 94162 deletions
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20
data-raw/datasets/microorganisms.groups.txt
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@@ -298,7 +298,6 @@
"B_HACEK" "B_HMPHL_PSCM" "Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella (HACEK)" "Haemophilus piscium"
"B_HACEK" "B_HMPHL_PTTM" "Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella (HACEK)" "Haemophilus pittmaniae"
"B_HACEK" "B_ACTNB_PLRP" "Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella (HACEK)" "Haemophilus pleuropneumoniae"
"B_HACEK" "B_HMPHL_QNTN" "Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella (HACEK)" "Haemophilus quentini"
"B_HACEK" "B_AGGRG_SGNS" "Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella (HACEK)" "Haemophilus segnis"
"B_HACEK" "B_HMPHL_SMNL" "Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella (HACEK)" "Haemophilus seminalis"
"B_HACEK" "B_HMPHL_SPTR" "Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella (HACEK)" "Haemophilus sputorum"
@@ -319,7 +318,6 @@
"B_KLBSL_PNMN-C" "B_KLBSL_QSPN" "Klebsiella pneumoniae complex" "Klebsiella quasipneumoniae"
"B_KLBSL_PNMN-C" "B_KLBSL_QSPN_QSPN" "Klebsiella pneumoniae complex" "Klebsiella quasipneumoniae quasipneumoniae"
"B_KLBSL_PNMN-C" "B_KLBSL_QSPN_SMLP" "Klebsiella pneumoniae complex" "Klebsiella quasipneumoniae similipneumoniae"
"B_KLBSL_PNMN-C" "B_KLBSL_QSVR" "Klebsiella pneumoniae complex" "Klebsiella quasivariicola"
"B_KLBSL_PNMN-C" "B_KLBSL_VRCL" "Klebsiella pneumoniae complex" "Klebsiella variicola"
"B_KLBSL_PNMN-C" "B_KLBSL_VRCL_TRPC" "Klebsiella pneumoniae complex" "Klebsiella variicola tropica"
"B_KLBSL_PNMN-C" "B_KLBSL_VRCL_LNSS" "Klebsiella pneumoniae complex" "Klebsiella variicola tropicalensis"
@@ -332,22 +330,20 @@
"F_MYRZY_GLLR-C" "F_MYRZY_GLLR" "Meyerozyma guilliermondii complex" "Meyerozyma guilliermondii japonica"
"F_MYRZY_GLLR-C" "F_MYRZY_GLLR" "Meyerozyma guilliermondii complex" "Meyerozyma guilliermondii muhira"
"F_MYRZY_GLLR-C" "F_MYRZY_GLLR" "Meyerozyma guilliermondii complex" "Meyerozyma guilliermondii pseudoguilliermondii"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM" "Mycobacterium avium-intracellulare complex" "Mycobacterium avium"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM_AVIM" "Mycobacterium avium-intracellulare complex" "Mycobacterium avium avium"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM_PRTB" "Mycobacterium avium-intracellulare complex" "Mycobacterium avium paratuberculosis"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM_SLVT" "Mycobacterium avium-intracellulare complex" "Mycobacterium avium silvaticum"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE" "Mycobacterium avium-intracellulare complex" "Mycobacterium intracellulare"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE_CHMR" "Mycobacterium avium-intracellulare complex" "Mycobacterium intracellulare chimaera"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE_INTR" "Mycobacterium avium-intracellulare complex" "Mycobacterium intracellulare intracellulare"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE_CHMR" "Mycobacterium avium-intracellulare complex" "Mycobacterium intracellulare yongonense"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM" "Mycobacterium avium complex" "Mycobacterium avium"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM_AVIM" "Mycobacterium avium complex" "Mycobacterium avium avium"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM_PRTB" "Mycobacterium avium complex" "Mycobacterium avium paratuberculosis"
"B_MYCBC_AVIM-C" "B_MYCBC_AVIM_SLVT" "Mycobacterium avium complex" "Mycobacterium avium silvaticum"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE" "Mycobacterium avium complex" "Mycobacterium intracellulare"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE_CHMR" "Mycobacterium avium complex" "Mycobacterium intracellulare chimaera"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE_INTR" "Mycobacterium avium complex" "Mycobacterium intracellulare intracellulare"
"B_MYCBC_AVIM-C" "B_MYCBC_LLRE_CHMR" "Mycobacterium avium complex" "Mycobacterium intracellulare yongonense"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium africanum"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium bovis"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium bovis bovis"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium bovis caprae"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium caprae"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium microti"
"B_MYCBC_TBRC-C" "B_MYCBC_MUNG" "Mycobacterium tuberculosis complex" "Mycobacterium mungi"
"B_MYCBC_TBRC-C" "B_MYCBC_ORYG" "Mycobacterium tuberculosis complex" "Mycobacterium orygis"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium pinnipedii"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium tuberculosis"
"B_MYCBC_TBRC-C" "B_MYCBC_TBRC" "Mycobacterium tuberculosis complex" "Mycobacterium tuberculosis caprae"