P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-06-24 10:16:23 +02:00
Code Releases Activity

(v3.0.1.9059) Update taxonomy of microorganisms

Browse Source
This commit is contained in:
Matthijs Berends
2026-06-23 01:38:13 +02:00
committed by GitHub
parent 0af3f84655
commit 3f9f931777
123 changed files with 121928 additions and 94162 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
index.md
View File

@@ -8,7 +8,7 @@
- Peer-reviewed, used in over 175 countries, available in 28 languages
- Generates **antibiograms** - traditional, combined, syndromic, and
even WISCA
- Provides the **full microbiological taxonomy** of ~79 000 distinct
- Provides the **full microbiological taxonomy** of ~97 000 distinct
species and extensive info of ~620 antimicrobial drugs
- Applies **CLSI 2011-2026** and **EUCAST 2011-2026** clinical and
veterinary breakpoints, and ECOFFs, for MIC and disk zone
@@ -59,7 +59,7 @@ formed the basis of two PhD theses ([DOI
10.33612/diss.177417131](https://doi.org/10.33612/diss.177417131) and
[DOI 10.33612/diss.192486375](https://doi.org/10.33612/diss.192486375)).
After installing this package, R knows [**~79 000 distinct microbial
After installing this package, R knows [**~97 000 distinct microbial
species**](./reference/microorganisms.html) (updated June 2024) and all
[**~620 antimicrobial and antiviral
drugs**](./reference/antimicrobials.html) by name and code (including