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(v3.0.1.9059) Update taxonomy of microorganisms

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Matthijs Berends
2026-06-23 01:38:13 +02:00
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parent 0af3f84655
commit 3f9f931777
123 changed files with 121928 additions and 94162 deletions
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6
man/proportion.Rd
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@@ -14,9 +14,6 @@
\alias{proportion_df}
\alias{sir_df}
\title{Calculate Antimicrobial Resistance}
\source{
\strong{M39 Analysis and Presentation of Cumulative Antimicrobial Susceptibility Test Data, 5th Edition}, 2022, \emph{Clinical and Laboratory Standards Institute (CLSI)}. \url{https://clsi.org/standards/products/microbiology/documents/m39/}.
}
\usage{
resistance(..., minimum = 30, as_percent = FALSE,
only_all_tested = FALSE, guideline = getOption("AMR_guideline",
@@ -275,6 +272,9 @@ if (require("dplyr")) {
}
}
}
\references{
\strong{M39 Analysis and Presentation of Cumulative Antimicrobial Susceptibility Test Data, 5th Edition}, 2022, \emph{Clinical and Laboratory Standards Institute (CLSI)}. \url{https://clsi.org/standards/products/microbiology/documents/m39/}.
}
\seealso{
\code{\link[=count]{count()}} to count resistant and susceptible isolates.
}