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@ -38,7 +38,7 @@
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@ -370,19 +370,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S S R S R I</span></span>
<span><span class="co"># 2 R R R I R R</span></span>
<span><span class="co"># 3 S S S S S R</span></span>
<span><span class="co"># 4 R R I R R I</span></span>
<span><span class="co"># 5 S R I S S S</span></span>
<span><span class="co"># 6 S I S S S I</span></span>
<span><span class="co"># 1 I I R I I S</span></span>
<span><span class="co"># 2 S R I R R S</span></span>
<span><span class="co"># 3 S R R I S R</span></span>
<span><span class="co"># 4 S I R R S I</span></span>
<span><span class="co"># 5 I I S I I I</span></span>
<span><span class="co"># 6 S I S S I S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<span><span class="co"># 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -423,40 +423,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3245</td>
<td align="right">64.90%</td>
<td align="right">3245</td>
<td align="right">64.90%</td>
<td align="right">3170</td>
<td align="right">63.40%</td>
<td align="right">3170</td>
<td align="right">63.40%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">989</td>
<td align="right">19.78%</td>
<td align="right">4234</td>
<td align="right">84.68%</td>
<td align="right">998</td>
<td align="right">19.96%</td>
<td align="right">4168</td>
<td align="right">83.36%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">415</td>
<td align="right">8.30%</td>
<td align="right">4649</td>
<td align="right">92.98%</td>
<td align="right">431</td>
<td align="right">8.62%</td>
<td align="right">4599</td>
<td align="right">91.98%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">247</td>
<td align="right">4.94%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
<td align="right">284</td>
<td align="right">5.68%</td>
<td align="right">4883</td>
<td align="right">97.66%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">117</td>
<td align="right">2.34%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>