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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9040</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9041</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.025 0.0625 8 4 >=64 2 0.025 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 4 <=0.002 32 0.025 0.01 0.125 8 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 0.01 <=0.002 0.005 1 0.125 <=0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.0625 0.005 8 2 16 16 256 0.5 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.005 0.125 0.01 8 0.002 4 256 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 128 2 16 64 0.025 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 6 18 6 12 41 34 46 48 22 6 8 35 45 35 39 23 11 12 42 26 35 39 40 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 10 46 14 41 48 36 46 11 6 23 45 46 50 17 45 32 19 18 49 43 40 47 49 44 48</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R S S S S I R R R S R S I R S R I S R R R S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I I S I I I I R R I I I R I S R S I S I I R R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 4 32 0.125 128 0.25 0.025 <=0.001 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 0.005 <=0.001 2 4 0.005 1 0.005 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 8 64 128 4 1 128 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.001 0.25 0.005 0.002 0.005 4 1 0.01 4 256 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 16 128 2 0.25 0.001 8 0.25 8 0.005 256 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 2 4 1 32 4 0.5 2 16 0.25 >=64 1 0.5 2 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 >=64 32 >=64 16 1 0.5 8 8 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 2 4 4 2 >=16 1 4 >=16 8 1 8 2 >=16 >=16</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 4 8 2 2 >=16 4 4 4 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.025 0.125 0.5 1 8 0.25 0.025 4 0.25 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 1 0.5 0.125 2 8 4 0.125 0.5 8 0.25 0.025 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.025 0.5 0.25 >=16 <=0.025 <=0.025 0.5 >=16 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.025 <=0.025 0.125 0.5 4 2 >=16 8 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 1 1 0.25 0.25 0.25 0.25 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 40 44 38 42 13 50 38 49 45 46 32 45 17 50 31 27 43 40 19 47 45 22 19 26 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 40 37 45 48 39 40 9 41 36 15 22 20 50 30 12 12 45 34 40 24 41 35 41 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 16 13 13 14 12 12 13 12 12 11 14 11 13 11 14 15 17 11 14 12 13 13 14 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 15 14 17 17 12 16 11 13 12 17 13 11 12 17 11 12 14 14 13 15 16 13 16 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 23 17 20 23 15 16 15 15 21 22 17 22 23 22 23 17 15 16 24 18 24 26 23 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 17 26 27 27 15 20 26 20 23 27 23 22 21 17 16 18 23 20 20 19 19 23 18 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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