diff --git a/DESCRIPTION b/DESCRIPTION index 8be709a1e..3ba56e875 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 3.0.1.9130 +Version: 3.0.1.9131 Date: 2026-10-13 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index f9d80c1f3..314230129 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 3.0.1.9130 +# AMR 3.0.1.9131 Planned as v3.1.0, mid October 2026. diff --git a/cran-comments.md b/cran-comments.md index a1633c454..957d2b7a0 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,13 +1,6 @@ This version is a minor release (v3.1.0) following the bugfix release v3.0.1 in September 2025. It adds the EUCAST 2026 and CLSI 2026 clinical breakpoints (EUCAST 2026 is now the default), a taxonomic update of all microorganisms, unified EUCAST and CLSI interpretive rules, support for `tidymodels` pipelines, and many improvements and bug fixes, as listed in `NEWS.md`. -This release contains four breaking changes, each documented in `NEWS.md`: - -* Following the reclassification of Bacteria and Archaea into new kingdoms (Göker and Oren, 2024), `mo_kingdom()` now returns the formal kingdom, while the new function `mo_domain()` returns the former output -* Parallel computing in `as.sir()`, `antibiogram()`, and `wisca()` now uses the suggested packages `future` and `future.apply` -* The options of the `capped_mic_handling` argument of `as.sir()` have been redefined -* `as.sir()` now returns WT/NWT (wildtype/non-wildtype) instead of S/R for interpretation based on epidemiological cut-off values (ECOFFs) - -This package has two reverse dependencies, `MIC` and `MIMER`, both checked against this version. `MIMER` passes. `MIC` is affected by the WT/NWT change, which makes some of its unit tests fail; its maintainer has been informed in advance through an issue in its GitHub repository. +This package has two reverse dependencies, `MIC` and `MIMER`, both checked against this version. `MIMER` passes. `MIC` is affected by a change in the output of `as.sir()` for interpretation based on epidemiological cut-off values (ECOFFs), which makes some of its unit tests fail; its maintainer has been informed in advance through an issue in its GitHub repository. As with all previous >20 releases, some CHECKs on `oldrel` may return a `NOTE` for narrowly exceeding the installation size limit. This has been reduced to a minimum in prior coordination with CRAN maintainers and currently returns only an `INFO` on `release` and `devel`.