P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-10 00:23:03 +02:00
Code Releases Activity

website update

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-12-31 14:30:06 +01:00
parent 154fec27dd
commit 4255707cb7
28 changed files with 64036 additions and 613 deletions
Download Patch File Download Diff File Expand all files Collapse all files

30
docs/reference/like.html
View File

@ -210,28 +210,38 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><span class='co'># NOT RUN {</span>
<span class='co'># simple test</span>
<pre class="examples"><div class='input'><span class='co'># simple test</span>
<span class='no'>a</span> <span class='kw'>&lt;-</span> <span class='st'>"This is a test"</span>
<span class='no'>b</span> <span class='kw'>&lt;-</span> <span class='st'>"TEST"</span>
<span class='no'>a</span> <span class='kw'>%like%</span> <span class='no'>b</span>
<span class='co'>#&gt; TRUE</span>
<span class='no'>b</span> <span class='kw'>%like%</span> <span class='no'>a</span>
<span class='co'>#&gt; FALSE</span>
<span class='no'>a</span> <span class='kw'>%like%</span> <span class='no'>b</span></div><div class='output co'>#&gt; [1] TRUE</div><div class='input'><span class='co'>#&gt; TRUE</span>
<span class='no'>b</span> <span class='kw'>%like%</span> <span class='no'>a</span></div><div class='output co'>#&gt; [1] FALSE</div><div class='input'><span class='co'>#&gt; FALSE</span>
<span class='co'># also supports multiple patterns, length must be equal to x</span>
<span class='no'>a</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"Test case"</span>, <span class='st'>"Something different"</span>, <span class='st'>"Yet another thing"</span>)
<span class='no'>b</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"case"</span>, <span class='st'>"diff"</span>, <span class='st'>"yet"</span>)
<span class='no'>a</span> <span class='kw'>%like%</span> <span class='no'>b</span>
<span class='co'>#&gt; TRUE TRUE TRUE</span>
<span class='no'>a</span> <span class='kw'>%like%</span> <span class='no'>b</span></div><div class='output co'>#&gt; [1] TRUE TRUE TRUE</div><div class='input'><span class='co'>#&gt; TRUE TRUE TRUE</span>
<span class='co'># get frequencies of bacteria whose name start with 'Ent' or 'ent'</span>
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/library'>library</a></span>(<span class='no'>dplyr</span>)
<span class='no'>septic_patients</span> <span class='kw'>%&gt;%</span>
<span class='fu'><a href='join.html'>left_join_microorganisms</a></span>() <span class='kw'>%&gt;%</span>
<span class='fu'><a href='http://dplyr.tidyverse.org/reference/filter.html'>filter</a></span>(<span class='no'>genus</span> <span class='kw'>%like%</span> <span class='st'>'^ent'</span>) <span class='kw'>%&gt;%</span>
<span class='fu'><a href='freq.html'>freq</a></span>(<span class='no'>genus</span>, <span class='no'>species</span>)
<span class='co'># }</span></pre>
<span class='fu'><a href='freq.html'>freq</a></span>(<span class='no'>genus</span>, <span class='no'>species</span>)</div><div class='output co'>#&gt; <span class='message'>Joining, by = "mo"</span></div><div class='output co'>#&gt;
#&gt;
#&gt; **Frequency table of `genus` and `species`**
#&gt;
#&gt;
#&gt; | |Item | Count| Percent| Cum. Count| Cum. Percent|
#&gt; |:--|:--------------------------|-----:|-------:|----------:|------------:|
#&gt; |1 |Enterococcus faecalis | 39| 35.8%| 39| 35.8%|
#&gt; |2 |Enterobacter cloacae | 23| 21.1%| 62| 56.9%|
#&gt; |3 |Enterococcus faecium | 21| 19.3%| 83| 76.1%|
#&gt; |4 |Enterococcus species | 20| 18.3%| 103| 94.5%|
#&gt; |5 |Enterobacter aerogenes | 3| 2.8%| 106| 97.2%|
#&gt; |6 |Enterococcus avium | 2| 1.8%| 108| 99.1%|
#&gt; |7 |Enterococcus casseliflavus | 1| 0.9%| 109| 100.0%|
#&gt;
#&gt; </div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>