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add mo_current()

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dr. M.S. (Matthijs) Berends
2022-10-10 10:12:08 +02:00
parent b753b84128
commit 43c638d122
7 changed files with 37 additions and 8 deletions
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7
man/mo_property.Rd
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@ -30,6 +30,7 @@
\alias{mo_rank}
\alias{mo_taxonomy}
\alias{mo_synonyms}
\alias{mo_current}
\alias{mo_info}
\alias{mo_url}
\title{Get Properties of a Microorganism}
@ -231,6 +232,8 @@ mo_synonyms(
...
)
mo_current(x, language = get_AMR_locale(), ...)
mo_info(
x,
language = get_AMR_locale(),
@ -272,7 +275,7 @@ mo_property(
\value{
\itemize{
\item An \link{integer} in case of \code{\link[=mo_year]{mo_year()}}
\item A \link{list} in case of \code{\link[=mo_taxonomy]{mo_taxonomy()}} and \code{\link[=mo_info]{mo_info()}}
\item A \link{list} in case of \code{\link[=mo_taxonomy]{mo_taxonomy()}}, \code{\link[=mo_synonyms]{mo_synonyms()}} and \code{\link[=mo_info]{mo_info()}}
\item A named \link{character} in case of \code{\link[=mo_url]{mo_url()}}
\item A \link{numeric} in case of \code{\link[=mo_snomed]{mo_snomed()}}
\item A \link{character} in all other cases
@ -304,6 +307,8 @@ All output \link[=translate]{will be translated} where possible.
The function \code{\link[=mo_url]{mo_url()}} will return the direct URL to the online database entry, which also shows the scientific reference of the concerned species.
SNOMED codes - \code{\link[=mo_snomed]{mo_snomed()}} - are from the version of 1 July, 2021. See \emph{Source} and the \link{microorganisms} data set for more info.
Old taxonomic names (so-called 'synonyms') can be retrieved with \code{\link[=mo_synonyms]{mo_synonyms()}}, the current taxonomic name can be retrieved with \code{\link[=mo_current]{mo_current()}}. Both functions return full names.
}
\section{Matching Score for Microorganisms}{