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(v0.9.0.9012) Support for LOINC codes

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dr. M.S. (Matthijs) Berends
2020-01-26 20:20:00 +01:00
parent 19172b1d48
commit 449d9bde35
35 changed files with 92866 additions and 295 deletions
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20
man/ab_property.Rd
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@@ -11,6 +11,7 @@
\alias{ab_group}
\alias{ab_atc_group1}
\alias{ab_atc_group2}
\alias{ab_loinc}
\alias{ab_ddd}
\alias{ab_info}
\title{Property of an antibiotic}
@@ -31,6 +32,8 @@ ab_atc_group1(x, language = get_locale(), ...)
ab_atc_group2(x, language = get_locale(), ...)
ab_loinc(x, ...)
ab_ddd(x, administration = "oral", units = FALSE, ...)
ab_info(x, language = get_locale(), ...)
@@ -91,18 +94,18 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
ab_name("AMX") # "Amoxicillin"
ab_atc("AMX") # J01CA04 (ATC code from the WHO)
ab_cid("AMX") # 33613 (Compound ID from PubChem)
ab_synonyms("AMX") # a list with brand names of amoxicillin
ab_tradenames("AMX") # same
ab_group("AMX") # "Beta-lactams/penicillins"
ab_atc_group1("AMX") # "Beta-lactam antibacterials, penicillins"
ab_atc_group2("AMX") # "Penicillins with extended spectrum"
# smart lowercase tranformation
ab_name(x = c("AMC", "PLB")) # "Amoxicillin/clavulanic acid" "Polymyxin B"
ab_name(x = c("AMC", "PLB"),
tolower = TRUE) # "amoxicillin/clavulanic acid" "polymyxin B"
# defined daily doses (DDD)
ab_ddd("AMX", "oral") # 1
ab_ddd("AMX", "oral", units = TRUE) # "g"
ab_ddd("AMX", "iv") # 1
@@ -110,12 +113,13 @@ ab_ddd("AMX", "iv", units = TRUE) # "g"
ab_info("AMX") # all properties as a list
# all ab_* functions use as.ab() internally:
ab_name("Fluclox") # "Flucloxacillin"
ab_name("fluklox") # "Flucloxacillin"
ab_name("floxapen") # "Flucloxacillin"
ab_name(21319) # "Flucloxacillin" (using CID)
ab_name("J01CF05") # "Flucloxacillin" (using ATC)
# all ab_* functions use as.ab() internally, so you can go from 'any' to 'any':
ab_atc("AMP") # ATC code of AMP (ampicillin)
ab_group("J01CA01") # Drug group of ampicillins ATC code
ab_loinc("ampicillin") # LOINC codes of ampicillin
ab_name("21066-6") # "Ampicillin" (using LOINC)
ab_name(6249) # "Ampicillin" (using CID)
ab_name("J01CA01") # "Ampicillin" (using ATC)
# spelling from different languages and dyslexia are no problem
ab_atc("ceftriaxon")