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(v0.9.0.9012) Support for LOINC codes

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dr. M.S. (Matthijs) Berends
2020-01-26 20:20:00 +01:00
parent 19172b1d48
commit 449d9bde35
35 changed files with 92866 additions and 295 deletions
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5
man/eucast_rules.Rd
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@ -3,7 +3,7 @@
\name{eucast_rules}
\alias{eucast_rules}
\alias{EUCAST}
\title{EUCAST rules}
\title{Apply EUCAST rules}
\source{
\itemize{
\item EUCAST Expert Rules. Version 2.0, 2012. \cr
@ -60,9 +60,10 @@ Before further processing, some non-EUCAST rules are applied to improve the effi
\item Set amoxicillin/clavulanic acid (AMC) = S where amoxicillin (AMX) = S;
\item Set piperacillin/tazobactam (TZP) = S where piperacillin (PIP) = S;
\item Set trimethoprim/sulfamethoxazole (SXT) = S where trimethoprim (TMP) = S.
To \emph{not} use these rules, please use \code{eucast_rules(..., rules = c("breakpoints", "expert"))}.
}
To \emph{not} use these rules, please use \code{eucast_rules(..., rules = c("breakpoints", "expert"))}.
The file containing all EUCAST rules is located here: \url{https://gitlab.com/msberends/AMR/blob/master/data-raw/eucast_rules.tsv}.
}
\section{Antibiotics}{