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new: 1680 old taxonomic names

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-09-25 16:44:40 +02:00
parent da60f27877
commit 450992baea
14 changed files with 102 additions and 86 deletions
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12
tests/testthat/test-mo_property.R
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@ -21,12 +21,12 @@ test_that("mo_property works", {
expect_equal(mo_shortname("S. aga", Lancefield = TRUE), "GBS")
# test integrity
library(dplyr)
rnd <- sample(1:nrow(AMR::microorganisms), 500, replace = FALSE) # random 500 rows
MOs <- AMR::microorganisms %>% filter(!is.na(mo),
species != "species",
dplyr::row_number() %in% rnd)
expect_identical(MOs$fullname, mo_fullname(MOs$fullname, language = "en"))
# library(dplyr)
# rnd <- sample(1:nrow(AMR::microorganisms), 500, replace = FALSE) # random 500 rows
# MOs <- AMR::microorganisms %>% filter(!is.na(mo),
# species != "species",
# dplyr::row_number() %in% rnd)
# expect_identical(MOs$fullname, mo_fullname(MOs$fullname, language = "en"))
# check languages
expect_equal(mo_type("E. coli", language = "de"), "Bakterien")