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(v1.2.0.9038) CLSI 2019 fix

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dr. M.S. (Matthijs) Berends
2020-07-29 10:33:47 +02:00
parent 1b65d76cfb
commit 453f7f210b
65 changed files with 211 additions and 514 deletions
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NEWS.md
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# AMR 1.2.0.9037
## <small>Last updated: 28 July 2020</small>
# AMR 1.2.0.9038
## <small>Last updated: 29 July 2020</small>
### New
* Function `ab_from_text()` to retrieve antimicrobial drug names, doses and forms of administration from clinical texts in e.g. health care records, which also corrects for misspelling since it uses `as.ab()` internally
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* Fixed a bug where `as.ab()` would return an error on invalid input values
* The `as.ab()` function will now throw a note if more than 1 antimicrobial drug could be retrieved from a single input value.
* Fixed a bug where `eucast_rules()` would not work on a tibble when the `tibble` or `dplyr` package was loaded
* Fixed a bug for CLSI 2019 guidelines (using `as.rsi()`), that also included results for animals. It now only contains interpretation guidelines for humans.
* All `*_join_microorganisms()` functions and `bug_drug_combinations()` now return the original data class (e.g. `tibble`s and `data.table`s)
* For functions `rsi_df()`, `proportion_df()` and `count_df()`:
* Fixed a bug for using grouped versions