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(v1.7.1.9043) unit tests
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parent
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commit
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26
.github/workflows/check.yaml
vendored
26
.github/workflows/check.yaml
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@ -84,12 +84,6 @@ jobs:
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R_REPOSITORIES: "https://cran.rstudio.com"
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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R_KEEP_PKG_SOURCE: yes
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R_CHECK_CRAN_INCOMING: false
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R_CHECK_FORCE_SUGGESTS: false
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R_CHECK_DEPENDS_ONLY: true
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R_CHECK_LENGTH_1_CONDITION: verbose
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R_CHECK_LENGTH_1_LOGIC2: verbose
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R_RUN_TINYTEST: true
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steps:
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- uses: actions/checkout@v2
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@ -102,9 +96,16 @@ jobs:
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http-user-agent: ${{ matrix.config.http-user-agent }}
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v1
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with:
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extra-packages: rcmdcheck
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- name: show file list
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run: ls -lh
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shell: bash
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- name: Install dependencies
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if: always()
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run: |
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install.packages("remotes")
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remotes::install_local("data-raw/AMR_latest.tar.gz", dependencies = TRUE)
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shell: Rscript {0}
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- name: Show session info
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if: always()
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@ -116,10 +117,15 @@ jobs:
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- uses: r-lib/actions/check-r-package@v1
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env:
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_R_CHECK_CRAN_INCOMING_: false
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_R_CHECK_FORCE_SUGGESTS_: false
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_R_CHECK_DEPENDS_ONLY_: true
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_R_CHECK_LENGTH_1_CONDITION_: verbose
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_R_CHECK_LENGTH_1_LOGIC2_: verbose
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R_RUN_TINYTEST: true
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# during 'R CMD check', R_LIBS_USER will be overwritten, so:
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R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
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- name: Show unit tests output
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if: always()
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run: find check -name 'tinytest.Rout*' -exec cat '{}' \; || true
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6
.github/workflows/codecovr.yaml
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6
.github/workflows/codecovr.yaml
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@ -26,11 +26,11 @@
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on:
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push:
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branches:
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- premaster
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- master
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- development
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- main
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pull_request:
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branches:
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- master
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- main
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name: code-coverage
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6
.github/workflows/lintr.yaml
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6
.github/workflows/lintr.yaml
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@ -26,11 +26,11 @@
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on:
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push:
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branches:
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- premaster
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- master
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- development
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- main
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pull_request:
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branches:
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- master
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- main
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name: lintr
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@ -1,5 +1,5 @@
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Package: AMR
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Version: 1.7.1.9041
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Version: 1.7.1.9043
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Date: 2021-09-29
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Title: Antimicrobial Resistance Data Analysis
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Description: Functions to simplify and standardise antimicrobial resistance (AMR)
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2
NEWS.md
2
NEWS.md
@ -1,4 +1,4 @@
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# `AMR` 1.7.1.9041
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# `AMR` 1.7.1.9043
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## <small>Last updated: 29 September 2021</small>
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### Breaking changes
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Binary file not shown.
@ -44,7 +44,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9041</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9043</span>
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</span>
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</div>
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@ -92,7 +92,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9041</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9043</span>
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</span>
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</div>
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@ -240,9 +240,9 @@
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<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
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</div>
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<div id="amr-1719041" class="section level1">
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<h1 class="page-header" data-toc-text="1.7.1.9041">
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<a href="#amr-1719041" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9041</h1>
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<div id="amr-1719043" class="section level1">
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<h1 class="page-header" data-toc-text="1.7.1.9043">
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<a href="#amr-1719043" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9043</h1>
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<div id="last-updated-29-september-2021" class="section level2">
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<h2 class="hasAnchor">
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<a href="#last-updated-29-september-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 29 September 2021</small>
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