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articles/AMR.html
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@@ -30,7 +30,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9009</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9008</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -91,7 +91,7 @@
website update since they are based on randomly created values and the
page was written in <a href="https://rmarkdown.rstudio.com/" class="external-link">R
Markdown</a>. However, the methodology remains unchanged. This page was
generated on 23 December 2025.</p>
generated on 06 January 2026.</p>
<div class="section level2">
<h2 id="introduction">Introduction<a class="anchor" aria-label="anchor" href="#introduction"></a>
</h2>
@@ -125,7 +125,7 @@ including the requirements mentioned above.</p>
<p>The <code>AMR</code> package enables standardised and reproducible
AMR data analysis, with the application of evidence-based rules,
determination of first isolates, translation of various codes for
microorganisms and antimicrobial agents, determination of (multi-drug)
microorganisms and antimicrobial drugs, determination of (multi-drug)
resistant microorganisms, and calculation of antimicrobial resistance,
prevalence and future trends.</p>
</div>
@@ -147,21 +147,21 @@ make the structure of your data generally look like this:</p>
</tr></thead>
<tbody>
<tr class="odd">
<td align="center">2025-12-23</td>
<td align="center">2026-01-06</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">S</td>
</tr>
<tr class="even">
<td align="center">2025-12-23</td>
<td align="center">2026-01-06</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">R</td>
</tr>
<tr class="odd">
<td align="center">2025-12-23</td>
<td align="center">2026-01-06</td>
<td align="center">efgh</td>
<td align="center">Escherichia coli</td>
<td align="center">R</td>
@@ -847,14 +847,14 @@ language to be Spanish using the <code>language</code> argument:</p>
</tr></thead>
<tbody>
<tr class="odd">
<td align="left">Gram negativo</td>
<td align="left">Gram-negative</td>
<td align="left">98% (96-99%,N=256)</td>
<td align="left">96% (95-98%,N=684)</td>
<td align="left">0% (0-10%,N=35)</td>
<td align="left">96% (94-97%,N=686)</td>
</tr>
<tr class="even">
<td align="left">Gram positivo</td>
<td align="left">Gram-positive</td>
<td align="left">0% (0-1%,N=436)</td>
<td align="left">63% (60-66%,N=1170)</td>
<td align="left">0% (0-1%,N=436)</td>