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@@ -3,8 +3,8 @@
**Note:** values on this page will change with every website update
since they are based on randomly created values and the page was written
in [R Markdown](https://rmarkdown.rstudio.com/). However, the
methodology remains unchanged. This page was generated on 23 December
2025.
methodology remains unchanged. This page was generated on 06 January
2026.
## Introduction
@@ -38,7 +38,7 @@ mentioned above.
The `AMR` package enables standardised and reproducible AMR data
analysis, with the application of evidence-based rules, determination of
first isolates, translation of various codes for microorganisms and
antimicrobial agents, determination of (multi-drug) resistant
antimicrobial drugs, determination of (multi-drug) resistant
microorganisms, and calculation of antimicrobial resistance, prevalence
and future trends.
@@ -52,9 +52,9 @@ structure of your data generally look like this:
| date | patient_id | mo | AMX | CIP |
|:----------:|:----------:|:----------------:|:---:|:---:|
| 2025-12-23 | abcd | Escherichia coli | S | S |
| 2025-12-23 | abcd | Escherichia coli | S | R |
| 2025-12-23 | efgh | Escherichia coli | R | S |
| 2026-01-06 | abcd | Escherichia coli | S | S |
| 2026-01-06 | abcd | Escherichia coli | S | R |
| 2026-01-06 | efgh | Escherichia coli | R | S |
### Needed R packages
@@ -672,8 +672,8 @@ antibiogram(example_isolates,
| Patógeno | Amikacina | Gentamicina | Kanamicina | Tobramicina |
|:--------------|:-------------------|:--------------------|:----------------|:-------------------|
| Gram negativo | 98% (96-99%,N=256) | 96% (95-98%,N=684) | 0% (0-10%,N=35) | 96% (94-97%,N=686) |
| Gram positivo | 0% (0-1%,N=436) | 63% (60-66%,N=1170) | 0% (0-1%,N=436) | 34% (31-38%,N=665) |
| Gram-negative | 98% (96-99%,N=256) | 96% (95-98%,N=684) | 0% (0-10%,N=35) | 96% (94-97%,N=686) |
| Gram-positive | 0% (0-1%,N=436) | 63% (60-66%,N=1170) | 0% (0-1%,N=436) | 34% (31-38%,N=665) |
#### Combined Antibiogram