P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 00:02:38 +02:00
Code Releases Activity

(v1.2.0.9024) AMR calculation speed improvement

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-07-03 10:51:55 +02:00
parent 152ac5bcad
commit 46cf423eab
12 changed files with 38 additions and 35 deletions
Download Patch File Download Diff File Expand all files Collapse all files

9
NEWS.md
View File

@ -1,5 +1,5 @@
# AMR 1.2.0.9023
## <small>Last updated: 02-Jul-2020</small>
# AMR 1.2.0.9024
## <small>Last updated: 03-Jul-2020</small>
### New
* Function `ab_from_text()` to retrieve antimicrobial drug names, doses and forms of administration from clinical texts in e.g. health care records, which also corrects for misspelling since it uses `as.ab()` internally
@ -19,7 +19,10 @@
* Added Monuril as trade name for fosfomycin
### Changed
* Using unexisting columns in all `count_*()`, `proportion_*()`, `susceptibility()` and `resistance()` functions wil now return an error instead of dropping them silently. Using variables for column names (as well as `dplyr::all_of()`) now works again.
* Improvements for `susceptibility()` and `resistance()` and all `count_*()`, `proportion_*()` functions:
* 95% speed improvement (!) by using other base R functions for calculation
* Using unexisting columns wil now return an error instead of dropping them silently
* Using variables for column names (as well as `dplyr::all_of()`) now works again
* Improvements for `as.ab()`:
* Dramatic improvement of the algorithm behind `as.ab()`, making many more input errors translatable, such as digitalised health care records, using too few or too many vowels or consonants and many more
* Added progress bar