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(v1.2.0.9024) AMR calculation speed improvement

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dr. M.S. (Matthijs) Berends
2020-07-03 10:51:55 +02:00
parent 152ac5bcad
commit 46cf423eab
12 changed files with 38 additions and 35 deletions
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docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9023</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9024</span>
</span>
</div>
@ -229,13 +229,13 @@
<small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1209023" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9023">
<a href="#amr-1209023" class="anchor"></a>AMR 1.2.0.9023<small> Unreleased </small>
<div id="amr-1209024" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9024">
<a href="#amr-1209024" class="anchor"></a>AMR 1.2.0.9024<small> Unreleased </small>
</h1>
<div id="last-updated-02-jul-2020" class="section level2">
<div id="last-updated-03-jul-2020" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-02-jul-2020" class="anchor"></a><small>Last updated: 02-Jul-2020</small>
<a href="#last-updated-03-jul-2020" class="anchor"></a><small>Last updated: 03-Jul-2020</small>
</h2>
<div id="new" class="section level3">
<h3 class="hasAnchor">
@ -262,7 +262,13 @@
<h3 class="hasAnchor">
<a href="#changed" class="anchor"></a>Changed</h3>
<ul>
<li>Using unexisting columns in all <code>count_*()</code>, <code>proportion_*()</code>, <code><a href="../reference/proportion.html">susceptibility()</a></code> and <code><a href="../reference/proportion.html">resistance()</a></code> functions wil now return an error instead of dropping them silently. Using variables for column names (as well as <code><a href="https://dplyr.tidyverse.org/reference/reexports.html">dplyr::all_of()</a></code>) now works again.</li>
<li>Improvements for <code><a href="../reference/proportion.html">susceptibility()</a></code> and <code><a href="../reference/proportion.html">resistance()</a></code> and all <code>count_*()</code>, <code>proportion_*()</code> functions:
<ul>
<li>95% speed improvement (!) by using other base R functions for calculation</li>
<li>Using unexisting columns wil now return an error instead of dropping them silently</li>
<li>Using variables for column names (as well as <code><a href="https://dplyr.tidyverse.org/reference/reexports.html">dplyr::all_of()</a></code>) now works again</li>
</ul>
</li>
<li>Improvements for <code><a href="../reference/as.ab.html">as.ab()</a></code>:
<ul>
<li>Dramatic improvement of the algorithm behind <code><a href="../reference/as.ab.html">as.ab()</a></code>, making many more input errors translatable, such as digitalised health care records, using too few or too many vowels or consonants and many more</li>