P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-27 18:27:58 +02:00
Code Releases Activity

Built site for AMR: 2.1.1.9004@83e92fd

Browse Source
This commit is contained in:
github-actions
2023-12-04 07:26:20 +00:00
parent d65eb144db
commit 4720b842e6
90 changed files with 255 additions and 252 deletions
Download Patch File Download Diff File Expand all files Collapse all files

62
articles/MDR.html
View File

@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9003</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9004</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -401,19 +401,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R S S R R I</span></span>
<span><span class="co">#&gt; 2 I R S R S I</span></span>
<span><span class="co">#&gt; 3 R R I S R S</span></span>
<span><span class="co">#&gt; 4 R I S R I I</span></span>
<span><span class="co">#&gt; 5 S R I I I R</span></span>
<span><span class="co">#&gt; 6 S S R S R S</span></span>
<span><span class="co">#&gt; 1 R R S R S I</span></span>
<span><span class="co">#&gt; 2 S S S S R I</span></span>
<span><span class="co">#&gt; 3 S S R S S I</span></span>
<span><span class="co">#&gt; 4 I I R I I I</span></span>
<span><span class="co">#&gt; 5 I I I R I R</span></span>
<span><span class="co">#&gt; 6 R S I R I I</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 R</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 R</span></span>
<span><span class="co">#&gt; 5 R</span></span>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 R</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -454,40 +454,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3209</td>
<td align="right">64.18%</td>
<td align="right">3209</td>
<td align="right">64.18%</td>
<td align="right">3252</td>
<td align="right">65.04%</td>
<td align="right">3252</td>
<td align="right">65.04%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">955</td>
<td align="right">19.10%</td>
<td align="right">4164</td>
<td align="right">83.28%</td>
<td align="right">927</td>
<td align="right">18.54%</td>
<td align="right">4179</td>
<td align="right">83.58%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">451</td>
<td align="right">9.02%</td>
<td align="right">4615</td>
<td align="right">92.30%</td>
<td align="right">475</td>
<td align="right">9.50%</td>
<td align="right">4654</td>
<td align="right">93.08%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">256</td>
<td align="right">5.12%</td>
<td align="right">4871</td>
<td align="right">97.42%</td>
<td align="right">242</td>
<td align="right">4.84%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">129</td>
<td align="right">2.58%</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>