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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9003</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9004</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -210,42 +210,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 1 1 1 0.025 0.025 0.5 <=0.002 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] >=256 8 0.005 64 64 128 4 4 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.005 <=0.002 4 0.25 64 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 1 0.01 0.005 32 0.025 >=256 32 0.025 0.005 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.001 8 16 0.001 8 64 8 16 0.001 0.002 0.025 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 16 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 13 8 13 40 16 7 20 14 47 19 26 41 25 14 41 47 40 49 40 46 30 46 32 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 31 19 46 34 39 11 18 21 43 6 50 28 15 48 11 50 42 30 25 29 49 22 50 20 6</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I S I I R I S I S S R I I R S S I R I R R I I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I R R S R I R I R I I S S R I S S I I S R S S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 4 0.25 0.001 4 0.125 0.002 0.125 1 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.002 2 0.002 0.0625 0.001 1 0.001 8 4 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 0.25 128 64 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.001 0.01 128 0.002 16 0.01 0.002 0.025 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 0.025 0.002 2 256 0.25 0.125 16 2 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 16 128 128 128 0.0625</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 8 16 64 4 1 4 64 0.5 16 32 16 32 4 8 1 2 32 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 8 0.5 32 64 32 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 1 16 16 32 32 2 16 0.5 8 32 8 8 8 32 32 16 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 2 4 8 4 16 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 2 0.5 0.5 2 >=4 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.25 1 0.5 >=4 2 0.25 <=0.125 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 <=0.125 0.25 >=4 0.25 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 2 >=4 <=0.0625 0.5 1 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 1 >=4 1 0.125 2 0.25 1 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 1 2 2 >=4 >=4 1 0.25 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 43 10 16 28 42 41 41 48 21 20 46 23 24 41 13 46 46 17 27 48 47 41 20 44</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 48 11 40 10 50 25 40 49 42 18 32 47 27 36 36 13 42 50 47 18 49 14 50 39 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 16 13 13 17 11 17 13 15 17 17 11 15 14 14 17 16 17 15 16 13 14 16 11 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 15 15 11 17 13 17 11 16 13 12 13 15 13 16 12 12 16 13 15 17 16 11 14 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 23 23 15 26 16 21 25 23 22 22 21 16 19 27 23 25 18 26 17 24 25 22 18 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 16 16 21 17 24 20 15 24 23 17 16 25 16 19 15 18 27 26 21 27 27 19 27 26</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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